{"id":13832451,"url":"https://bernatgel.github.io/karyoploter_tutorial/","last_synced_at":"2025-07-09T19:30:30.092Z","repository":{"id":141416175,"uuid":"79214816","full_name":"bernatgel/karyoploter_tutorial","owner":"bernatgel","description":"Examples on how to use the karyoploteR R/Bioconductor package","archived":false,"fork":false,"pushed_at":"2023-02-03T11:49:10.000Z","size":21363,"stargazers_count":10,"open_issues_count":0,"forks_count":4,"subscribers_count":2,"default_branch":"master","last_synced_at":"2024-08-04T11:01:13.663Z","etag":null,"topics":["bioconductor","bioinformatics","data-visualization","genomics-visualization","plotting-in-r","rstats","tutorial"],"latest_commit_sha":null,"homepage":null,"language":null,"has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/bernatgel.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null}},"created_at":"2017-01-17T10:10:21.000Z","updated_at":"2023-09-25T15:45:41.000Z","dependencies_parsed_at":"2024-01-15T17:49:26.027Z","dependency_job_id":null,"html_url":"https://github.com/bernatgel/karyoploter_tutorial","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bernatgel%2Fkaryoploter_tutorial","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bernatgel%2Fkaryoploter_tutorial/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bernatgel%2Fkaryoploter_tutorial/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bernatgel%2Fkaryoploter_tutorial/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/bernatgel","download_url":"https://codeload.github.com/bernatgel/karyoploter_tutorial/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":225581746,"owners_count":17491782,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["bioconductor","bioinformatics","data-visualization","genomics-visualization","plotting-in-r","rstats","tutorial"],"created_at":"2024-08-04T11:00:17.628Z","updated_at":"2024-11-20T15:30:41.799Z","avatar_url":"https://github.com/bernatgel.png","language":null,"funding_links":[],"categories":["Uncategorized"],"sub_categories":["Uncategorized"],"readme":"[![Project Status: Active – The project has reached a stable, usable state and is being actively developed.](http://www.repostatus.org/badges/latest/active.svg)](http://www.repostatus.org/#active)\n\n# Examples of plots created with karyoploteR\n\nThis repo contains the code to build a github.io page with a tutorial and a number of small examples on how to use the Bioconductor package [karyoploteR](http://bioconductor.org/packages/karyoploteR) \nto create karyoplots, that is, the chromosome ideograms accompained by any arbitrary\ndata.\n\nThey can be found at [https://bernatgel.github.io/karyoploter_tutorial/](https://bernatgel.github.io/karyoploter_tutorial/)\n\n![Multiple Data Types Figure](https://raw.githubusercontent.com/bernatgel/karyoploter_tutorial/master/docs/Examples/MultipleDataTypes/images/Figure-1.png \"Multiple Data Types\")\n\nThe examples are written in RMarkdown, processed with knitr and published by Jekyll on the Github Pages platform. This code could be easily adapted to create examples pages for other packages if needed.\n\n*** \n\nFor additional documentation on karyoploteR, please refer to the [vignette](http://bioconductor.org/packages/devel/bioc/vignettes/karyoploteR/inst/doc/karyoploteR.pdf) and the [reference manual](http://bioconductor.org/packages/devel/bioc/manuals/karyoploteR/man/karyoploteR.pdf)\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/bernatgel.github.io%2Fkaryoploter_tutorial%2F","html_url":"https://awesome.ecosyste.ms/projects/bernatgel.github.io%2Fkaryoploter_tutorial%2F","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/bernatgel.github.io%2Fkaryoploter_tutorial%2F/lists"}