{"id":13676153,"url":"https://bids-standard.github.io/bids-examples/","last_synced_at":"2025-04-29T03:30:46.155Z","repository":{"id":37735100,"uuid":"43176854","full_name":"bids-standard/bids-examples","owner":"bids-standard","description":"A set of BIDS compatible datasets with empty raw data files that can be used for writing lightweight software tests.","archived":false,"fork":false,"pushed_at":"2025-03-18T11:20:09.000Z","size":101941,"stargazers_count":188,"open_issues_count":33,"forks_count":142,"subscribers_count":32,"default_branch":"master","last_synced_at":"2025-03-18T12:27:13.343Z","etag":null,"topics":["bids","data-standards","dataset","neuroimaging","standards"],"latest_commit_sha":null,"homepage":"http://bids-standard.github.io/bids-examples/","language":"MATLAB","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/bids-standard.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":"CONTRIBUTING.md","funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2015-09-25T21:41:26.000Z","updated_at":"2025-03-18T11:20:13.000Z","dependencies_parsed_at":"2024-08-07T03:45:41.416Z","dependency_job_id":"6d434415-104c-42e1-9c1d-31f6e43b2312","html_url":"https://github.com/bids-standard/bids-examples","commit_stats":null,"previous_names":[],"tags_count":28,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bids-standard%2Fbids-examples","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bids-standard%2Fbids-examples/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bids-standard%2Fbids-examples/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bids-standard%2Fbids-examples/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/bids-standard","download_url":"https://codeload.github.com/bids-standard/bids-examples/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":251426725,"owners_count":21587638,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["bids","data-standards","dataset","neuroimaging","standards"],"created_at":"2024-08-02T13:00:19.239Z","updated_at":"2025-04-29T03:30:41.144Z","avatar_url":"https://github.com/bids-standard.png","language":"MATLAB","funding_links":[],"categories":["Datasets"],"sub_categories":[],"readme":"[![GitHub Actions](https://github.com/bids-standard/bids-examples/workflows/validate_datasets/badge.svg)](https://github.com/bids-standard/bids-examples/actions)\n![GitHub repo size](https://img.shields.io/github/repo-size/bids-standard/bids-examples)\n\n\nThe content of this repository can also be viewed here:\n\n**https://bids-standard.github.io/bids-examples/**\n\n# bids-examples\n\nThis repository contains a set of\n[BIDS-compatible](https://bids.neuroimaging.io/) datasets with **empty raw data\nfiles**. These datasets can be useful to:\n\n1. write lightweight software tests\n1. serve as an example on how a BIDS dataset can be structured\n\n**ALL RAW DATA FILES IN THIS REPOSITORY ARE EMPTY!**\n\nHowever for some of the data, the headers containing the metadata are still\nintact. (For example the NIfTI headers for `.nii` files, the BrainVision data\nheaders for `.vhdr` files, or the OME-XML headers for `.ome.tif` files.)\n\nHeaders are intact for the following datasets:\n\n- `synthetic`\n- Most EEG or iEEG data in BrainVision format (e.g., `eeg_matchingpennies`)\n\n## Validating BIDS examples\n\nThe next three sections mention a few details on how the `bids-examples` can be\nvalidated using `bids-validator`.\n\nFor general information on the `bids-validator`, including installation and\nusage, see the\n[bids-validator README file](https://github.com/bids-standard/bids-validator#quickstart).\n\n### Validating individual examples\n\nSince all raw data files in this repository are empty, the `bids-validator` must\nto be configured to not report empty data files as errors. (See more on\nbids-validator configuration in the\n[bids-validator README](https://github.com/bids-standard/bids-validator#configuration).)\n\nJust run the validator as follows (using the `eeg_matchingpennies` dataset as an\nexample, and assuming you are in a command line at the root of the\n`bids-examples` repository):\n\n`bids-validator eeg_matchingpennies --config.ignore=99`\n\nThe `--config.ignore=99` \"flag\" tells the bids-validator to ignore empty data\nfiles rather than to report the \"empty file\" error .\n\nFor datasets that contain NIfTI `.nii` files, you also need to add the\n`ignoreNiftiHeaders` flag to the `bids-validator` call, to suppress the issue\nthat NIfTI headers are not found.\n\nFor example:\n\n`bids-validator ds003 --config.ignore=99 --ignoreNiftiHeaders`\n\n### Validating all examples\n\nIf you want to validate all examples in one go, you can use the `run_tests.sh`\nscript that is provided in this repository. This script makes use of the\n`bidsconfig.json` configuration file for the `bids-validator`, and appropriately\nhandles some special case examples (see\n[Validator Exceptions](#validator-exceptions)).\n\nSimply run `./run_tests.sh` in a command line from the root of the\n`bids-examples` repository.\n\n### Validator exceptions\n\nSome datasets may include a custom `.bids-validator-config.json` to ignore\nerrors generated from idiosyncrasies of the datasets as they existed on\ncreation.\n\n| name | errors ignored |\n| ------------- | ------------------------------------------------------------------------------------------------------------------------------ |\n| genetics_ukbb | SliceTiming values for tasks is larger than given TR, EchoTime1 and EchoTime2 are not provided for any of the phasediff files. |\n\nOther datasets may include a `.SKIP_VALIDATION` file, to skip the validation\nwith the continuous integration service. This is useful for datasets that\n_cannot_ pass at the moment due to lack of coverage in the\n[bids-validator](https://github.com/bids-standard/bids-validator).\n\nNote however, that the `.SKIP_VALIDATION` file only impacts the continuous\nintegration service, or validation when run with the `run_tests.sh` script (see\n[Validating all examples](#validating-all-examples)). This file does **not**\nhave any effect when running `bids-validator` from custom scripts, the web-based\nvalidator, docker, or from the command line.\n\n| name | why skipped |\n| ----------------- | ------------------------------------------------------ |\n| ds000001-fmriprep | lack of coverage for \"derivatives\" in `bids-validator` |\n\n## Contributing\n\nWe are happy to receive contributions in the form of:\n\n- updates to existing examples, or the [dataset index](#dataset-index)\n- new examples\n - only if they cover aspects that are currently not covered by existing\n examples\n - only if a maintainer can be found for this dataset\n- suggestions on how to improve the bids-examples repository\n\nFor more information, please see our\n[CONTRIBUTING.md](./CONTRIBUTING.md)\nfile or open a\n[new GitHub Issue](https://github.com/bids-standard/bids-examples/issues/new)\nand ask us directly.\n\n## Dataset index\n\u003c!-- ADD EXAMPLE LISTING HERE --\u003e\n\u003c!--\nTABLE BELOW IS GENERATED AUTOMATICALLY.\nDO NOT EDIT DIRECTLY.\n--\u003e\n\n\n### ASL\n\n\u003c!--\nTABLE BELOW IS GENERATED AUTOMATICALLY.\nDO NOT EDIT DIRECTLY.\n--\u003e\n\n| name | description | datatypes | suffixes | link to full data | maintained by |\n|:--------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------|:-----------------|:------------------------------------------|:------------------------------|:-----------------------------------------|\n| [2d_mb_pcasl](https://github.com/bids-standard/bids-examples/tree/master/2d_mb_pcasl) | Siemens 2D MultiBand Multi-delay PCASL (m0 and noRF included within timeseries) | anat, fmap, perf | T1w, asl, aslcontext, epi | [link](https://osf.io/xrkc4/) | [@aptinis](https://github.com/aptinis) |\n| [asl001](https://github.com/bids-standard/bids-examples/tree/master/asl001) | T1w, asl (GE, PCASL, 3D_SPIRAL), m0scan within timeseries | anat, perf | T1w, asl, aslcontext, asllabeling | [link](https://osf.io/yru2q/) | [@patsycle](https://github.com/patsycle) |\n| [asl002](https://github.com/bids-standard/bids-examples/tree/master/asl002) | T1w, asl (Philips, PCASL, 2D_EPI), m0scan as separate scan | anat, perf | T1w, asl, aslcontext, asllabeling, m0scan | [link](https://osf.io/yru2q/) | [@patsycle](https://github.com/patsycle) |\n| [asl003](https://github.com/bids-standard/bids-examples/tree/master/asl003) | T1w, asl (Siemens, PASL, multiTI), M0scan as separate scan | anat, perf | T1w, asl, aslcontext, asllabeling, m0scan | [link](https://osf.io/yru2q/) | [@patsycle](https://github.com/patsycle) |\n| [asl004](https://github.com/bids-standard/bids-examples/tree/master/asl004) | T1w, asl (Siemens, PCASL, multiPLD with pepolar), m0scan separate scans with pepolar approach | anat, fmap, perf | T1w, asl, aslcontext, asllabeling, m0scan | [link](https://osf.io/yru2q/) | [@patsycle](https://github.com/patsycle) |\n| [asl005](https://github.com/bids-standard/bids-examples/tree/master/asl005) | T1w, asl (Siemens, PCASL, singleTI, 3D_GRASE), m0scan as separate scan | anat, perf | T1w, asl, aslcontext, asllabeling, m0scan | [link](https://osf.io/yru2q/) | [@patsycle](https://github.com/patsycle) |\n\n### Behavioral\n\n\u003c!--\nTABLE BELOW IS GENERATED AUTOMATICALLY.\nDO NOT EDIT DIRECTLY.\n--\u003e\n\n| name | description | datatypes | suffixes | link to full data | maintained by |\n|:------------------------------------------------------------------------------------------------------------|:--------------------------------------------------------------------------------------------|:--------------------------------|:---------------------------------------------------------------------------------------------------------------|:-------------------------------------------------|:-------------------------------------------|\n| [ds000117](https://github.com/bids-standard/bids-examples/tree/master/ds000117) | A multi-subject, multi-modal human neuroimaging dataset of 19 subjects on a MEG visual task | anat, beh, dwi, fmap, func, meg | FLASH, T1w, bold, channels, coordsystem, dwi, events, headshape, magnitude1, magnitude2, meg, phasediff, scans | [link](https://openneuro.org/datasets/ds000117/) | [@RikHenson](https://github.com/RikHenson) |\n| [eeg_ds003645s_hed_demo](https://github.com/bids-standard/bids-examples/tree/master/eeg_ds003645s_hed_demo) | Shows usage of Hierarchical Event Descriptor (HED) in .tsv files | anat, beh, eeg, micr, motion | KSSSleep, SPIM, beh, channels, coordsystem, defacemask, eeg, electrodes, events, motion, photo, samples, scans | [link](https://openneuro.org/datasets/ds003645) | [@VisLab](https://github.com/VisLab) |\n| [synthetic](https://github.com/bids-standard/bids-examples/tree/master/synthetic) | A synthetic dataset | anat, beh, func | T1w, beh, bold, events, physio, scans, sessions, stim | n/a | [@effigies](https://github.com/effigies) |\n\n### EEG\n\n\u003c!--\nTABLE BELOW IS GENERATED AUTOMATICALLY.\nDO NOT EDIT DIRECTLY.\n--\u003e\n\n| name | description | datatypes | suffixes | link to full data | maintained by |\n|:------------------------------------------------------------------------------------------------------------------|:-------------------------------------------------------------------------------------------------------------------|:------------|:-----------------------------------------------|:------------------------------------------------|:-----------------------------------------------|\n| [eeg_cbm](https://github.com/bids-standard/bids-examples/tree/master/eeg_cbm) | Rest EEG. European Data Format (.edf) | eeg | channels, eeg, events, scans | n/a | [@cpernet](https://github.com/cpernet) |\n| [eeg_ds003645s_hed_library](https://github.com/bids-standard/bids-examples/tree/master/eeg_ds003645s_hed_library) | HED annotation using HED library vocabularies (schema). | eeg | channels, eeg, events | [link](https://openneuro.org/datasets/ds003645) | [@VisLab](https://github.com/VisLab) |\n| [eeg_face13](https://github.com/bids-standard/bids-examples/tree/master/eeg_face13) | Deconstructing the early visual electrocortical response to face and house stimuli. EDF format | eeg | channels, coordsystem, eeg, electrodes, events | n/a | [@andesha](https://github.com/andesha) |\n| [eeg_matchingpennies](https://github.com/bids-standard/bids-examples/tree/master/eeg_matchingpennies) | Offline data of BCI experiment decoding left vs. right hand movement. BrainVision data format (.eeg, .vhdr, .vmrk) | eeg | channels, eeg, events | [link](https://doi.org/10.17605/OSF.IO/CJ2DR) | [@sappelhoff](https://github.com/sappelhoff) |\n| [eeg_rishikesh](https://github.com/bids-standard/bids-examples/tree/master/eeg_rishikesh) | Mind wandering experiment. EEG data in Biosemi (.bdf) format | eeg | channels, eeg, events | [link](https://openneuro.org/datasets/ds001787) | [@arnodelorme](https://github.com/arnodelorme) |\n\n### DWI\n\n\u003c!--\nTABLE BELOW IS GENERATED AUTOMATICALLY.\nDO NOT EDIT DIRECTLY.\n--\u003e\n\n| name | description | datatypes | suffixes | link to full data | maintained by |\n|:------------------------------------------------------------------------------------------|:-----------------------------------------------------------------------------------------------------|:--------------------------------|:---------------------------------------------------------------------------------------------------------------|:---------------------------------------------------------------|:-------------------------------------------|\n| [ds000117](https://github.com/bids-standard/bids-examples/tree/master/ds000117) | A multi-subject, multi-modal human neuroimaging dataset of 19 subjects on a MEG visual task | anat, beh, dwi, fmap, func, meg | FLASH, T1w, bold, channels, coordsystem, dwi, events, headshape, magnitude1, magnitude2, meg, phasediff, scans | [link](https://openneuro.org/datasets/ds000117/) | [@RikHenson](https://github.com/RikHenson) |\n| [ds114](https://github.com/bids-standard/bids-examples/tree/master/ds114) | multiple tasks, multiple runs | anat, dwi, func | T1w, bold, dwi, events | [link](https://openneuro.org/datasets/ds000114/versions/1.0.1) | n/a |\n| [dwi_deriv](https://github.com/bids-standard/bids-examples/tree/master/dwi_deriv) | exemplifies the storage of diffusion MRI derivates that may be generated on the Siemens XA platform. | dwi | dwi | n/a | n/a |\n| [eeg_rest_fmri](https://github.com/bids-standard/bids-examples/tree/master/eeg_rest_fmri) | Resting state with simultaneous fMRI. BrainVision data format (.eeg, .vhdr, .vmrk) | anat, dwi, eeg, func | T1w, bold, dwi, eeg | n/a | [@cpernet](https://github.com/cpernet) |\n| [genetics_ukbb](https://github.com/bids-standard/bids-examples/tree/master/genetics_ukbb) | multiple tasks, T1w, DTI, BOLD, genetic info | anat, dwi, func | FLAIR, T1w, bold, dwi, events, info | n/a | [@cpernet](https://github.com/cpernet) |\n\n### iEEG\n\n\u003c!--\nTABLE BELOW IS GENERATED AUTOMATICALLY.\nDO NOT EDIT DIRECTLY.\n--\u003e\n\n| name | description | datatypes | suffixes | link to full data | maintained by |\n|:------------------------------------------------------------------------------------------------------------|:---------------------------------------------------------------------------------------------------------------|:-----------------------|:-----------------------------------------------------------------------|:----------------------------------------------------------------------------|:---------------------------------------------|\n| [ieeg_epilepsyNWB](https://github.com/bids-standard/bids-examples/tree/master/ieeg_epilepsyNWB) | multiple sessions, tutorial — derivative dataset of `ieeg_epilepsy` showcasing the NWB file format alternative | anat, ieeg | T1w, channels, coordsystem, electrodes, events, ieeg, scans | [link](https://neuroimage.usc.edu/bst/getupdate.php?s=tutorial_epimap_bids) | [@TheChymera](https://github.com/TheChymera) |\n| [ieeg_epilepsy](https://github.com/bids-standard/bids-examples/tree/master/ieeg_epilepsy) | multiple sessions, tutorial | anat, ieeg | T1w, channels, coordsystem, electrodes, events, ieeg, scans | [link](https://neuroimage.usc.edu/bst/getupdate.php?s=tutorial_epimap_bids) | [@ftadel](https://github.com/ftadel) |\n| [ieeg_epilepsy_ecog](https://github.com/bids-standard/bids-examples/tree/master/ieeg_epilepsy_ecog) | multiple sessions, tutorial | anat, ieeg | T1w, channels, coordsystem, electrodes, events, ieeg, photo, scans | [link](https://neuroimage.usc.edu/bst/getupdate.php?s=sample_ecog) | [@ftadel](https://github.com/ftadel) |\n| [ieeg_filtered_speech](https://github.com/bids-standard/bids-examples/tree/master/ieeg_filtered_speech) | recordings of three seizures | ieeg | channels, coordsystem, electrodes, events, ieeg, photo | n/a | [@choldgraf](https://github.com/choldgraf) |\n| [ieeg_motorMiller2007](https://github.com/bids-standard/bids-examples/tree/master/ieeg_motorMiller2007) | Cue-based hand \u0026 tongue movement data | ieeg | channels, coordsystem, electrodes, events, ieeg | n/a | [@dorahermes](https://github.com/dorahermes) |\n| [ieeg_visual](https://github.com/bids-standard/bids-examples/tree/master/ieeg_visual) | Stimulus dependence of gamma oscillations in human visual cortex | anat, ieeg | T1w, channels, coordsystem, electrodes, events, ieeg | n/a | [@dorahermes](https://github.com/dorahermes) |\n| [ieeg_visual_multimodal](https://github.com/bids-standard/bids-examples/tree/master/ieeg_visual_multimodal) | n/a | anat, fmap, func, ieeg | T1w, bold, channels, coordsystem, electrodes, epi, events, ieeg, sbref | n/a | [@irisgroen](https://github.com/irisgroen) |\n| [xeeg_hed_score](https://github.com/bids-standard/bids-examples/tree/master/xeeg_hed_score) | EEG and iEEG data with annotations of artifacts, seizures and modulators using HED-SCORE | anat, eeg, ieeg | T1w, channels, coordsystem, eeg, electrodes, events, ieeg | n/a | [@dorahermes](https://github.com/dorahermes) |\n\n### HED\n\n\u003c!--\nTABLE BELOW IS GENERATED AUTOMATICALLY.\nDO NOT EDIT DIRECTLY.\n--\u003e\n\n| name | description | datatypes | suffixes | link to full data | maintained by |\n|:------------------------------------------------------------------------------------------------------------------|:-----------------------------------------------------------------------------------------|:-----------------------------|:---------------------------------------------------------------------------------------------------------------|:------------------------------------------------|:---------------------------------------------|\n| [eeg_ds003645s_hed_demo](https://github.com/bids-standard/bids-examples/tree/master/eeg_ds003645s_hed_demo) | Shows usage of Hierarchical Event Descriptor (HED) in .tsv files | anat, beh, eeg, micr, motion | KSSSleep, SPIM, beh, channels, coordsystem, defacemask, eeg, electrodes, events, motion, photo, samples, scans | [link](https://openneuro.org/datasets/ds003645) | [@VisLab](https://github.com/VisLab) |\n| [eeg_ds003645s_hed_library](https://github.com/bids-standard/bids-examples/tree/master/eeg_ds003645s_hed_library) | HED annotation using HED library vocabularies (schema). | eeg | channels, eeg, events | [link](https://openneuro.org/datasets/ds003645) | [@VisLab](https://github.com/VisLab) |\n| [xeeg_hed_score](https://github.com/bids-standard/bids-examples/tree/master/xeeg_hed_score) | EEG and iEEG data with annotations of artifacts, seizures and modulators using HED-SCORE | anat, eeg, ieeg | T1w, channels, coordsystem, eeg, electrodes, events, ieeg | n/a | [@dorahermes](https://github.com/dorahermes) |\n\n### MEG\n\n\u003c!--\nTABLE BELOW IS GENERATED AUTOMATICALLY.\nDO NOT EDIT DIRECTLY.\n--\u003e\n\n| name | description | datatypes | suffixes | link to full data | maintained by |\n|:--------------------------------------------------------------------------------|:---------------------------------------------------------------------------------------------------------------------|:--------------------------------|:---------------------------------------------------------------------------------------------------------------|:---------------------------------------------------------------|:-------------------------------------------|\n| [ds000117](https://github.com/bids-standard/bids-examples/tree/master/ds000117) | A multi-subject, multi-modal human neuroimaging dataset of 19 subjects on a MEG visual task | anat, beh, dwi, fmap, func, meg | FLASH, T1w, bold, channels, coordsystem, dwi, events, headshape, magnitude1, magnitude2, meg, phasediff, scans | [link](https://openneuro.org/datasets/ds000117/) | [@RikHenson](https://github.com/RikHenson) |\n| [ds000246](https://github.com/bids-standard/bids-examples/tree/master/ds000246) | Auditory dataset used for Brainstorm’s general online tutorial | anat, meg | T1w, channels, coordsystem, headshape, meg, photo, scans | [link](https://openneuro.org/datasets/ds000246/versions/00001) | [@guiomar](https://github.com/guiomar) |\n| [ds000247](https://github.com/bids-standard/bids-examples/tree/master/ds000247) | Five minutes, eyes-open, resting-state MEG data from 5 subjects. This is a sample from The Open MEG Archive (OMEGA). | anat, meg | T1w, channels, coordsystem, headshape, meg, scans | [link](https://openneuro.org/datasets/ds000247/versions/00001) | [@guiomar](https://github.com/guiomar) |\n| [ds000248](https://github.com/bids-standard/bids-examples/tree/master/ds000248) | MNE sample data: Data with visual and auditory stimuli | anat, meg | FLASH, T1w, channels, coordsystem, events, meg, scans | [link](https://openneuro.org/datasets/ds000248/versions/00001) | [@agramfort](https://github.com/agramfort) |\n\n### Microscopy\n\n\u003c!--\nTABLE BELOW IS GENERATED AUTOMATICALLY.\nDO NOT EDIT DIRECTLY.\n--\u003e\n\n| name | description | datatypes | suffixes | link to full data | maintained by |\n|:------------------------------------------------------------------------------------------------------------|:------------------------------------------------------------------------------------------------|:-----------------------------|:---------------------------------------------------------------------------------------------------------------|:-------------------------------------------------------------|:---------------------------------------------|\n| [eeg_ds003645s_hed_demo](https://github.com/bids-standard/bids-examples/tree/master/eeg_ds003645s_hed_demo) | Shows usage of Hierarchical Event Descriptor (HED) in .tsv files | anat, beh, eeg, micr, motion | KSSSleep, SPIM, beh, channels, coordsystem, defacemask, eeg, electrodes, events, motion, photo, samples, scans | [link](https://openneuro.org/datasets/ds003645) | [@VisLab](https://github.com/VisLab) |\n| [micr_SEM](https://github.com/bids-standard/bids-examples/tree/master/micr_SEM) | Example SEM dataset in PNG format with 1 sample imaged over 2 sessions | micr | SEM, photo, samples, sessions | [link](https://doi.org/10.5281/zenodo.5498378) | [@jcohenadad](https://github.com/jcohenadad) |\n| [micr_SEMzarr](https://github.com/bids-standard/bids-examples/tree/master/micr_SEMzarr) | Example SEM dataset in PNG and OME-ZARR format with 1 sample imaged over 2 sessions | micr | SEM, SPIM, samples, sessions | n/a | [@TheChymera](https://github.com/TheChymera) |\n| [micr_SPIM](https://github.com/bids-standard/bids-examples/tree/master/micr_SPIM) | Example SPIM dataset in OME-TIFF format with 2 samples from the same subject with 4 chunks each | micr | SPIM, photo, samples | [link](https://doi.org/10.5281/zenodo.5517223) | [@jcohenadad](https://github.com/jcohenadad) |\n| [micr_XPCTzarr](https://github.com/bids-standard/bids-examples/tree/master/micr_XPCTzarr) | Example XPCT dataset in OME-ZARR format with 1 sample imaged | micr | XPCT, photo, samples, sessions | [link](https://human-organ-atlas.esrf.eu/datasets/572252538) | [@chourroutm](https://github.com/chourroutm) |\n\n### Motion\n\n\u003c!--\nTABLE BELOW IS GENERATED AUTOMATICALLY.\nDO NOT EDIT DIRECTLY.\n--\u003e\n\n| name | description | datatypes | suffixes | link to full data | maintained by |\n|:--------------------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------------------|:-----------------------------|:---------------------------------------------------------------------------------------------------------------|:--------------------------------------------------------|:-------------------------------------------------|\n| [eeg_ds003645s_hed_demo](https://github.com/bids-standard/bids-examples/tree/master/eeg_ds003645s_hed_demo) | Shows usage of Hierarchical Event Descriptor (HED) in .tsv files | anat, beh, eeg, micr, motion | KSSSleep, SPIM, beh, channels, coordsystem, defacemask, eeg, electrodes, events, motion, photo, samples, scans | [link](https://openneuro.org/datasets/ds003645) | [@VisLab](https://github.com/VisLab) |\n| [motion_dualtask](https://github.com/bids-standard/bids-examples/tree/master/motion_dualtask) | older and younger participants walking while performing discrimination task | eeg, motion | channels, eeg, events, motion, scans | n/a | [@sjeung](https://github.com/sjeung) |\n| [motion_spotrotation](https://github.com/bids-standard/bids-examples/tree/master/motion_spotrotation) | participants rotated heading using full-body motion or joystick | eeg, motion | channels, coordsystem, eeg, electrodes, events, motion, scans | [link](https://openneuro.org/datasets/ds004460) | [@sjeung](https://github.com/sjeung) |\n| [motion_systemvalidation](https://github.com/bids-standard/bids-examples/tree/master/motion_systemvalidation) | Example dataset of two different motion captured system recorded almost simultaneously, but no brain data | motion | channels, motion, scans | [link](https://doi.org/10.6084/m9.figshare.20238006.v2) | [@JuliusWelzel](https://github.com/JuliusWelzel) |\n\n### MRI\n\n\u003c!--\nTABLE BELOW IS GENERATED AUTOMATICALLY.\nDO NOT EDIT DIRECTLY.\n--\u003e\n\n| name | description | datatypes | suffixes | link to full data | maintained by |\n|:------------------------------------------------------------------------------------------------------------|:--------------------------------------------------------------------------------------------|:--------------------------------|:---------------------------------------------------------------------------------------------------------------|:---------------------------------------------------------------|:-------------------------------------------|\n| [7t_trt](https://github.com/bids-standard/bids-examples/tree/master/7t_trt) | n/a | anat, fmap, func | T1map, T1w, bold, magnitude1, magnitude2, phasediff, physio, scans, sessions | [link](https://bit.ly/2H0Z6Qt) | n/a |\n| [ds000117](https://github.com/bids-standard/bids-examples/tree/master/ds000117) | A multi-subject, multi-modal human neuroimaging dataset of 19 subjects on a MEG visual task | anat, beh, dwi, fmap, func, meg | FLASH, T1w, bold, channels, coordsystem, dwi, events, headshape, magnitude1, magnitude2, meg, phasediff, scans | [link](https://openneuro.org/datasets/ds000117/) | [@RikHenson](https://github.com/RikHenson) |\n| [ds001](https://github.com/bids-standard/bids-examples/tree/master/ds001) | single task, multiple runs | anat, func | T1w, bold, events, inplaneT2 | [link](https://openneuro.org/datasets/ds000001/versions/00006) | n/a |\n| [ds002](https://github.com/bids-standard/bids-examples/tree/master/ds002) | multiple tasks, multiple runs | anat, func | T1w, bold, events, inplaneT2 | [link](https://openneuro.org/datasets/ds000002/versions/00002) | n/a |\n| [ds003](https://github.com/bids-standard/bids-examples/tree/master/ds003) | single task, single run | anat, func | T1w, bold, events, inplaneT2 | [link](https://openneuro.org/datasets/ds000003/versions/00001) | n/a |\n| [ds005](https://github.com/bids-standard/bids-examples/tree/master/ds005) | single task, multiple runs | anat, func | T1w, bold, events, inplaneT2 | [link](https://openneuro.org/datasets/ds000005/versions/00001) | n/a |\n| [ds006](https://github.com/bids-standard/bids-examples/tree/master/ds006) | single task, multiple sessions, multiple runs | anat, func | T1w, bold, events, inplaneT2 | [link](https://openneuro.org/datasets/ds000006/versions/00001) | n/a |\n| [ds007](https://github.com/bids-standard/bids-examples/tree/master/ds007) | single task, multiple runs | anat, func | T1w, bold, events, inplaneT2 | [link](https://openneuro.org/datasets/ds000007/versions/00001) | n/a |\n| [ds008](https://github.com/bids-standard/bids-examples/tree/master/ds008) | multiple tasks, multiple runs | anat, func | T1w, bold, events, inplaneT2 | [link](https://openneuro.org/datasets/ds000008/versions/00001) | n/a |\n| [ds009](https://github.com/bids-standard/bids-examples/tree/master/ds009) | multiple tasks, multiple runs | anat, func | T1w, bold, events, inplaneT2, scans | [link](https://openneuro.org/datasets/ds000009/versions/00002) | n/a |\n| [ds011](https://github.com/bids-standard/bids-examples/tree/master/ds011) | multiple tasks, multiple runs | anat, func | T1w, bold, events, inplaneT2 | [link](https://openneuro.org/datasets/ds000011/versions/00001) | n/a |\n| [ds051](https://github.com/bids-standard/bids-examples/tree/master/ds051) | multiple tasks, multiple runs | anat, func | T1w, bold, events, inplaneT2 | [link](https://openneuro.org/datasets/ds000051/versions/00001) | n/a |\n| [ds052](https://github.com/bids-standard/bids-examples/tree/master/ds052) | multiple tasks, multiple runs | anat, func | T1w, bold, events, inplaneT2 | [link](https://openneuro.org/datasets/ds000052/versions/00001) | n/a |\n| [ds101](https://github.com/bids-standard/bids-examples/tree/master/ds101) | single task, multiple runs | anat, func | T1w, bold, events | [link](https://openneuro.org/datasets/ds000101/versions/00004) | n/a |\n| [ds102](https://github.com/bids-standard/bids-examples/tree/master/ds102) | single task, multiple runs | anat, func | T1w, bold, events | [link](https://openneuro.org/datasets/ds000102/versions/00001) | n/a |\n| [ds105](https://github.com/bids-standard/bids-examples/tree/master/ds105) | single task, multiple runs | anat, func | T1w, bold, events | [link](https://openneuro.org/datasets/ds000105/versions/00001) | n/a |\n| [ds107](https://github.com/bids-standard/bids-examples/tree/master/ds107) | single task, multiple runs | anat, func | T1w, bold, events | [link](https://openneuro.org/datasets/ds000107/versions/00001) | n/a |\n| [ds108](https://github.com/bids-standard/bids-examples/tree/master/ds108) | single task, multiple runs | anat, func | T1w, bold, events | [link](https://openneuro.org/datasets/ds000108/versions/00002) | n/a |\n| [ds109](https://github.com/bids-standard/bids-examples/tree/master/ds109) | multiple tasks, multiple runs | anat, func | T1w, bold, events | [link](https://openneuro.org/datasets/ds000109/versions/00001) | n/a |\n| [ds110](https://github.com/bids-standard/bids-examples/tree/master/ds110) | single task, multiple runs | anat, func | T1w, bold, events, inplaneT2 | [link](https://openneuro.org/datasets/ds000110/versions/00001) | n/a |\n| [ds113b](https://github.com/bids-standard/bids-examples/tree/master/ds113b) | forrest gump watching, multiple sessions, multiple runs | func | bold, events | [link](https://openneuro.org/datasets/ds000113/versions/1.3.0) | n/a |\n| [ds114](https://github.com/bids-standard/bids-examples/tree/master/ds114) | multiple tasks, multiple runs | anat, dwi, func | T1w, bold, dwi, events | [link](https://openneuro.org/datasets/ds000114/versions/1.0.1) | n/a |\n| [ds116](https://github.com/bids-standard/bids-examples/tree/master/ds116) | multiple tasks, multiple runs | anat, func | T1w, bold, events, inplaneT2 | [link](https://openneuro.org/datasets/ds000116/versions/00003) | n/a |\n| [ds210](https://github.com/bids-standard/bids-examples/tree/master/ds210) | multiple tasks, multiple runs | func | bold, physio | [link](https://openneuro.org/datasets/ds000210/versions/00002) | n/a |\n| [eeg_rest_fmri](https://github.com/bids-standard/bids-examples/tree/master/eeg_rest_fmri) | Resting state with simultaneous fMRI. BrainVision data format (.eeg, .vhdr, .vmrk) | anat, dwi, eeg, func | T1w, bold, dwi, eeg | n/a | [@cpernet](https://github.com/cpernet) |\n| [genetics_ukbb](https://github.com/bids-standard/bids-examples/tree/master/genetics_ukbb) | multiple tasks, T1w, DTI, BOLD, genetic info | anat, dwi, func | FLAIR, T1w, bold, dwi, events, info | n/a | [@cpernet](https://github.com/cpernet) |\n| [ieeg_visual_multimodal](https://github.com/bids-standard/bids-examples/tree/master/ieeg_visual_multimodal) | n/a | anat, fmap, func, ieeg | T1w, bold, channels, coordsystem, electrodes, epi, events, ieeg, sbref | n/a | [@irisgroen](https://github.com/irisgroen) |\n| [synthetic](https://github.com/bids-standard/bids-examples/tree/master/synthetic) | A synthetic dataset | anat, beh, func | T1w, beh, bold, events, physio, scans, sessions, stim | n/a | [@effigies](https://github.com/effigies) |\n\n### MRS\n\n\u003c!--\nTABLE BELOW IS GENERATED AUTOMATICALLY.\nDO NOT EDIT DIRECTLY.\n--\u003e\n\n| name | description | datatypes | suffixes | link to full data | maintained by |\n|:--------------------------------------------------------------------------------------|:---------------------------------------------------------------------------------------|:------------|:-------------------------|:-------------------------------------------------|:---------------------------------------------------|\n| [mrs_2dmrsi](https://github.com/bids-standard/bids-examples/tree/master/mrs_2dmrsi) | 2D sLASER MRSI data from 8 subjects | anat, mrs | T1w, mrsi | [link](https://zenodo.org/records/7701228) | [@markmikkelsen](https://github.com/markmikkelsen) |\n| [mrs_biggaba](https://github.com/bids-standard/bids-examples/tree/master/mrs_biggaba) | MEGA-PRESS and PRESS MRS data from 12 subjects from one site from the Big GABA project | anat, mrs | T1w, mrsref, svs | [link](https://www.nitrc.org/projects/biggaba) | [@markmikkelsen](https://github.com/markmikkelsen) |\n| [mrs_fmrs](https://github.com/bids-standard/bids-examples/tree/master/mrs_fmrs) | Functional MRS data involving a pain stimulus task from 15 subjects | anat, mrs | T1w, events, mrsref, svs | [link](https://www.nitrc.org/projects/fmrs_2020) | [@markmikkelsen](https://github.com/markmikkelsen) |\n\n### NIRS\n\n\u003c!--\nTABLE BELOW IS GENERATED AUTOMATICALLY.\nDO NOT EDIT DIRECTLY.\n--\u003e\n\n| name | description | datatypes | suffixes | link to full data | maintained by |\n|:----------------------------------------------------------------------------------------------------|:------------------------------------------------------------------------|:------------|:---------------------------------------------------------------------|:-----------------------------------------------|:---------------------------------------------------------|\n| [fnirs_automaticity](https://github.com/bids-standard/bids-examples/tree/master/fnirs_automaticity) | 24 subjects performing (non-)automatic finger tapping and foot stepping | nirs | channels, coordsystem, events, nirs, optodes, practicelogbook, scans | [link](https://doi.org/10.34973/vesb-mh30) | [@robertoostenveld](https://github.com/robertoostenveld) |\n| [fnirs_tapping](https://github.com/bids-standard/bids-examples/tree/master/fnirs_tapping) | Example fNIRS measurement with three conditions from five subjects | nirs | channels, coordsystem, events, nirs, optodes, scans | [link](https://doi.org/10.5281/zenodo.5529797) | [@rob-luke](https://github.com/rob-luke) |\n\n### PET\n\n\u003c!--\nTABLE BELOW IS GENERATED AUTOMATICALLY.\nDO NOT EDIT DIRECTLY.\n--\u003e\n\n| name | description | datatypes | suffixes | link to full data | maintained by |\n|:----------------------------------------------------------------------------|:----------------|:------------|:-----------------|:-------------------------------------------------|:---------------------------------------------|\n| [pet001](https://github.com/bids-standard/bids-examples/tree/master/pet001) | T1w, PET, blood | anat, pet | T1w, blood, pet | n/a | [@mnoergaard](https://github.com/mnoergaard) |\n| [pet002](https://github.com/bids-standard/bids-examples/tree/master/pet002) | T1w, PET | anat, pet | T1w, pet | [link](https://openneuro.org/datasets/ds001420/) | [@mnoergaard](https://github.com/mnoergaard) |\n| [pet003](https://github.com/bids-standard/bids-examples/tree/master/pet003) | T1w, PET, blood | anat, pet | T1w, blood, pet | n/a | [@mnoergaard](https://github.com/mnoergaard) |\n| [pet004](https://github.com/bids-standard/bids-examples/tree/master/pet004) | PET, blood | pet | blood, pet | n/a | [@mnoergaard](https://github.com/mnoergaard) |\n| [pet005](https://github.com/bids-standard/bids-examples/tree/master/pet005) | T1w, PET | anat, pet | T1w, events, pet | n/a | [@mnoergaard](https://github.com/mnoergaard) |\n\n### qMRI\n\n\u003c!--\nTABLE BELOW IS GENERATED AUTOMATICALLY.\nDO NOT EDIT DIRECTLY.\n--\u003e\n\n| name | description | datatypes | suffixes | link to full data | maintained by |\n|:--------------------------------------------------------------------------------------------|:-----------------------------------------------------------------------------------------|:------------|:-------------------------------------------------------|:------------------------------|:-------------------------------------------------------------|\n| [qmri_irt1](https://github.com/bids-standard/bids-examples/tree/master/qmri_irt1) | Inversion Recovery T1 mapping | anat | IRT1 | `not publicly available` | [@agahkarakuzu](https://github.com/agahkarakuzu) |\n| [qmri_megre](https://github.com/bids-standard/bids-examples/tree/master/qmri_megre) | Multi-Echo Gradient-Echo for T2star mapping. | anat | MEGRE | `not publicly available` | [@agahkarakuzu](https://github.com/agahkarakuzu) |\n| [qmri_mese](https://github.com/bids-standard/bids-examples/tree/master/qmri_mese) | Multi-Echo Spin-Echo for T2 or Myelin Water Fraction (MWF) mapping. | anat | MESE | `not publicly available` | [@agahkarakuzu](https://github.com/agahkarakuzu) |\n| [qmri_mp2rage](https://github.com/bids-standard/bids-examples/tree/master/qmri_mp2rage) | MP2RAGE for T1 mapping | anat | MP2RAGE, T1map, UNIT1, defacemask | [link](https://osf.io/k4bs5/) | [@Gilles86](https://github.com/Gilles86) |\n| [qmri_mp2rageme](https://github.com/bids-standard/bids-examples/tree/master/qmri_mp2rageme) | Multi-echo MP2RAGE | anat, fmap | MP2RAGE, TB1map | [link](https://osf.io/k4bs5/) | [@Gilles86](https://github.com/Gilles86) |\n| [qmri_mpm](https://github.com/bids-standard/bids-examples/tree/master/qmri_mpm) | Multi-parametric mapping for R1, R2star, MTsat and PD mapping | anat, fmap | MPM, RB1COR, TB1EPI, magnitude1, magnitude2, phasediff | [link](https://osf.io/k4bs5/) | [@ChristophePhillips](https://github.com/ChristophePhillips) |\n| [qmri_mtsat](https://github.com/bids-standard/bids-examples/tree/master/qmri_mtsat) | Example dataset for T1 and MTsat mapping. Includes a double-angle B1+ mapping example. | anat, fmap | MTS, TB1DAM | [link](https://osf.io/k4bs5/) | [@agahkarakuzu](https://github.com/agahkarakuzu) |\n| [qmri_qsm](https://github.com/bids-standard/bids-examples/tree/master/qmri_qsm) | Chimap using fast QSM | anat | T1w | `not publicly available` | [@agahkarakuzu](https://github.com/agahkarakuzu) |\n| [qmri_sa2rage](https://github.com/bids-standard/bids-examples/tree/master/qmri_sa2rage) | Fast B1+ mapping using SA2RAGE | fmap | TB1SRGE | `not publicly available` | [@agahkarakuzu](https://github.com/agahkarakuzu) |\n| [qmri_tb1tfl](https://github.com/bids-standard/bids-examples/tree/master/qmri_tb1tfl) | B1+ mapping with TurboFLASH readout. | fmap | TB1TFL | `not publicly available` | [@agahkarakuzu](https://github.com/agahkarakuzu) |\n| [qmri_vfa](https://github.com/bids-standard/bids-examples/tree/master/qmri_vfa) | Variable Flip Angle T1 mapping. Includes an Actual Flip Angle (AFI) B1+ mapping example. | anat, fmap | TB1AFI, VFA | [link](https://osf.io/k4bs5/) | [@agahkarakuzu](https://github.com/agahkarakuzu) |\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/bids-standard.github.io%2Fbids-examples%2F","html_url":"https://awesome.ecosyste.ms/projects/bids-standard.github.io%2Fbids-examples%2F","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/bids-standard.github.io%2Fbids-examples%2F/lists"}