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Working in BioNumPy should feel much like working in NumPy.\n\n\nGetting started\n----------------\n\n1. Install with pip:\n\n\t$ pip install bionumpy\n\n2. Import BioNumPy and read your data, e.g.:\n\n    \u003e\u003e\u003e import bionumpy as bnp\n    \u003e\u003e\u003e import numpy as np\n    \u003e\u003e\u003e f = bnp.open(\"example_data/big.fq.gz\")\n    \u003e\u003e\u003e # chunk contains the sequences of reads and NumPy-functions can be used\n    \u003e\u003e\u003e for chunk in f:\n    ...      print(np.sum(chunk.sequence == \"G\"))\n    53686\n\nCheck out the getting started guide and various tutorials in the `documentation \u003chttps://bionumpy.github.io/bionumpy/\u003e`_.\n\nYou can also find the latest version of the `BioNumPy manuscript here \u003chttps://github.com/bionumpy/bionumpy/blob/manuscript/bionumpymanuscript.pdf\u003e`_.\n\n\n\n\n","funding_links":[],"categories":["Software packages"],"sub_categories":["Data wrangling"],"project_url":"https://awesome.ecosyste.ms/api/v1/projects/bionumpy.github.io%2Fbionumpy%2F","html_url":"https://awesome.ecosyste.ms/projects/bionumpy.github.io%2Fbionumpy%2F","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/bionumpy.github.io%2Fbionumpy%2F/lists"}