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Epidemic model classes include deterministic compartmental models, stochastic individual-contact models, and stochastic network models. Network models use the robust statistical methods of exponential-family random graph models (ERGMs) from the [Statnet](https://statnet.org) suite of R packages. Standard templates for epidemic modeling include SI, SIR, and SIS disease types. EpiModel features an API for extending these templates to address novel research aims.\n\nEpiModel is part of a broader platform for infectious disease modeling. Visit **[epimodel.org](https://www.epimodel.org/)** for the full ecosystem, learning pathway, team, and project information.\n\n### Installation\n\nThe current release version can be found on [CRAN](https://CRAN.R-project.org/package=EpiModel) and installed with:\n\n``` r\ninstall.packages(\"EpiModel\", dependencies = TRUE)\n```\n\nTo install the development version, use the [remotes](https://github.com/r-lib/remotes) package:\n\n``` r\nif (!require(\"remotes\")) install.packages(\"remotes\")\nremotes::install_github(\"EpiModel/EpiModel\")\n```\n\n### Documentation\n\n**Package Documentation.** Full function reference, vignettes, and getting started guides are on the [pkgdown site](https://epimodel.github.io/EpiModel/).\n\n**Methods Paper.** The main methods paper in the *Journal of Statistical Software* describes the modeling framework and software design: [doi:10.18637/jss.v084.i08](https://doi.org/10.18637/jss.v084.i08).\n\n**Training Course.** [Network Modeling for Epidemics (NME)](https://epimodel.github.io/sismid/) is our course at the Summer Institute in Statistics and Modeling in Infectious Diseases (SISMID). Materials are open-source and updated annually.\n\n**EpiModel Gallery.** The [EpiModel Gallery](https://epimodel.github.io/EpiModel-Gallery/) provides worked examples and templates for extending EpiModel's stochastic network models with custom epidemic modules.\n\n### Getting Help\n\nUsers are encouraged to use [GitHub Issues](https://github.com/EpiModel/EpiModel/issues) to ask questions (both technical coding questions and conceptual modeling questions), report bugs, and request new features.\n\n### Citation\n\nIf using EpiModel for teaching or research, please include a citation to our main methods paper:\n\n\u003e Jenness SM, Goodreau SM and Morris M. EpiModel: An R Package for Mathematical Modeling of Infectious Disease over Networks. *Journal of Statistical Software.* 2018; 84(8): 1-47. doi: 10.18637/jss.v084.i08\n\nPlease also [send us an email](mailto:samuel.m.jenness@emory.edu?Subject=We%20Used%20EpiModel%20in%20Our%20Study!) if you have used EpiModel in your work so we can add it to our records.\n\n### Authors\n\nEpiModel is developed by [Samuel Jenness](https://www.epimodel.org/team.html), [Steven Goodreau](https://www.epimodel.org/team.html), [Martina Morris](https://www.epimodel.org/team.html), and [Adrien Le Guillou](https://www.epimodel.org/team.html). Additional contributors are listed on the [contributors](https://github.com/EpiModel/EpiModel/graphs/contributors) page. See the full team at [epimodel.org/team](https://www.epimodel.org/team.html).\n\n### Funding and Literature\n\nThe development of EpiModel has been supported by grants from the National Institutes of Health (NIH) and the Centers for Disease Control and Prevention (CDC). Details are available on the [project page](https://www.epimodel.org/about.html).\n\nEpiModel and its extension packages have been used in 125+ published studies. See the [full list](https://github.com/EpiModel/EpiModel/wiki/EpiModel-in-the-Scientific-Literature).\n\n### Copyright\n\nThese materials are distributed under the GPL-3 license, with the copyright and attribution requirements listed in the [LICENSE](https://github.com/EpiModel/EpiModel/blob/main/LICENSE.md).\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/epimodel.github.io%2FEpiModel%2F","html_url":"https://awesome.ecosyste.ms/projects/epimodel.github.io%2FEpiModel%2F","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/epimodel.github.io%2FEpiModel%2F/lists"}