{"id":18621317,"url":"https://github.com/4ment/phylojax","last_synced_at":"2025-11-03T13:30:28.898Z","repository":{"id":92150268,"uuid":"399420263","full_name":"4ment/phylojax","owner":"4ment","description":null,"archived":false,"fork":false,"pushed_at":"2023-03-27T01:54:04.000Z","size":93,"stargazers_count":2,"open_issues_count":0,"forks_count":0,"subscribers_count":2,"default_branch":"master","last_synced_at":"2024-12-27T04:42:25.441Z","etag":null,"topics":["jax","phylogenetics","variational-inference"],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/4ment.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2021-08-24T10:14:13.000Z","updated_at":"2023-03-23T01:41:37.000Z","dependencies_parsed_at":null,"dependency_job_id":"cc52eae9-e057-4768-a7fa-86f926bf5778","html_url":"https://github.com/4ment/phylojax","commit_stats":null,"previous_names":[],"tags_count":2,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/4ment%2Fphylojax","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/4ment%2Fphylojax/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/4ment%2Fphylojax/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/4ment%2Fphylojax/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/4ment","download_url":"https://codeload.github.com/4ment/phylojax/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":239414677,"owners_count":19634492,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["jax","phylogenetics","variational-inference"],"created_at":"2024-11-07T04:10:31.100Z","updated_at":"2025-11-03T13:30:28.842Z","avatar_url":"https://github.com/4ment.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"# phylojax\n\n## Installation\n\n### Get the phylojax source\n```bash\ngit clone https://github.com/4ment/phylojax\ncd phylojax\n```\n\n### Install dependencies\n\nInstalling dependencies using Anaconda\n```bash\nconda env create -f environment.yml\nconda activate phylojax\n```\n\n### Install phylotorch\n```bash\npython setup.py install\n```\n\n### Check install\n```bash\nphylojax --help\n```\n\n### Quick start\n```bash\nphylojax -t examples/fluA.tree -i examples/fluA.fa -m JC69\n```","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2F4ment%2Fphylojax","html_url":"https://awesome.ecosyste.ms/projects/github.com%2F4ment%2Fphylojax","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2F4ment%2Fphylojax/lists"}