{"id":13611159,"url":"https://github.com/AABoyles/MicrobeTrace","last_synced_at":"2025-04-13T01:35:12.835Z","repository":{"id":42342521,"uuid":"121793260","full_name":"AABoyles/MicrobeTrace","owner":"AABoyles","description":"The Visualization Multitool for Molecular Epidemiology and Bioinformatics","archived":false,"fork":false,"pushed_at":"2024-09-13T09:17:28.000Z","size":71859,"stargazers_count":11,"open_issues_count":16,"forks_count":39,"subscribers_count":3,"default_branch":"master","last_synced_at":"2024-09-13T22:52:05.157Z","etag":null,"topics":["bioinformatics","cdc","epidemiology","genomic-data-analysis","genomics","genomics-visualization","hiv","network-analysis","network-graph","network-visualization","pathogens","phylogenetic-trees","phylogenetics","phylogenomics","phylogeny","sequence-alignment"],"latest_commit_sha":null,"homepage":"https://aaboyles.github.io/MicrobeTrace/","language":"HTML","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"apache-2.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/AABoyles.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":"SECURITY.md","support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2018-02-16T19:45:18.000Z","updated_at":"2024-09-05T20:10:52.000Z","dependencies_parsed_at":"2024-03-31T06:31:44.871Z","dependency_job_id":"3c3be482-0ecb-49d6-acbb-b43928f3b8c5","html_url":"https://github.com/AABoyles/MicrobeTrace","commit_stats":null,"previous_names":[],"tags_count":2,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/AABoyles%2FMicrobeTrace","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/AABoyles%2FMicrobeTrace/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/AABoyles%2FMicrobeTrace/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/AABoyles%2FMicrobeTrace/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/AABoyles","download_url":"https://codeload.github.com/AABoyles/MicrobeTrace/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":223558607,"owners_count":17165156,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["bioinformatics","cdc","epidemiology","genomic-data-analysis","genomics","genomics-visualization","hiv","network-analysis","network-graph","network-visualization","pathogens","phylogenetic-trees","phylogenetics","phylogenomics","phylogeny","sequence-alignment"],"created_at":"2024-08-01T19:01:52.352Z","updated_at":"2024-11-07T17:31:36.264Z","avatar_url":"https://github.com/AABoyles.png","language":"HTML","funding_links":[],"categories":["HTML"],"sub_categories":[],"readme":"[![MicrobeTrace](https://raw.githubusercontent.com/CDCgov/MicrobeTrace/master/img/android-chrome-192x192.png \"MicrobeTrace\")](https://microbetrace.cdc.gov/MicrobeTrace/)\n\n# MicrobeTrace [![MicrobeTrace DOI](https://img.shields.io/badge/DOI-10.1101%2F2020.07.22.216275-blue)](https://doi.org/10.1101/2020.07.22.216275)\n\n*The Visualization Multitool for Molecular Epidemiology and Bioinformatics*\n\nDeveloped By ([some folks](https://github.com/CDCgov/MicrobeTrace/blob/master/humans.txt) at) CDC.\n\n## To Use MicrobeTrace:\n\n* **[Launch MicrobeTrace](https://microbetrace.cdc.gov/MicrobeTrace/)**\n* [Download Sample Data](https://github.com/CDCgov/MicrobeTrace/raw/master/demo/MicrobetraceDemoData.zip)\n* [Download Sample COVID Data](https://github.com/CDCgov/MicrobeTrace/raw/master/demo/COVID%20Dummy%20Data.zip)\n* [View the Help Wiki](https://github.com/CDCgov/MicrobeTrace/wiki)\n* [Read the Latest Manual](https://github.com/CDCgov/MicrobeTrace/raw/master/docs/MicrobeTrace_Manual.pdf)\n* [Watch and follow along with the webinar](https://www.youtube.com/watch?v=5E-_Kb7yvHU)\n* [Watch how to use MicrobeTrace for COVID-19](https://www.youtube.com/watch?v=he0Yq5yvToc)\n* [Cite MicrobeTrace](https://github.com/CDCgov/MicrobeTrace/wiki/Cite-MicrobeTrace)\n\n## To Spread the Word:\n\n* [View the MicrobeTrace Flyer](https://github.com/CDCgov/MicrobeTrace/blob/master/docs/MicrobeTrace%20Flyer_Sept_2019.pdf)\n* [Read our Reports](https://medium.com/microbetrace-reports/latest)\n* [Connect with our User Community](https://www.reddit.com/r/MicrobeTrace/)\n\n## To Help Us Build:\n\n* [Report Bugs or Request Features](https://github.com/CDCgov/MicrobeTrace/issues)\n* [Request Access to Our Slack](mailto:microbetrace@cdc.gov?subject=Slack%20Request\u0026body=Hello!%0AI'd%20like%20an%20invitation%20to%20join%20the%20MicrobeTrace%20Slack%20Channel%2C%20please.%0AThank%20you!)\n* [Deploy Your Own Instance of MicrobeTrace](https://github.com/CDCgov/MicrobeTrace/wiki/z-Deployment)\n* [Help us Develop MicrobeTrace](https://github.com/CDCgov/MicrobeTrace/wiki/z-Development)\n\n## Public Domain\nThis project constitutes a work of the United States Government and is not\nsubject to domestic copyright protection under 17 USC § 105. This project is in\nthe public domain within the United States, and copyright and related rights in\nthe work worldwide are waived through the [CC0 1.0 Universal public domain dedication](https://creativecommons.org/publicdomain/zero/1.0/).\nAll contributions to this project will be released under the CC0 dedication. By\nsubmitting a pull request you are agreeing to comply with this waiver of\ncopyright interest.\n\n## License\nThe project utilizes code licensed under the terms of the Apache Software\nLicense and therefore is licensed under ASL v2 or later.\n\nThis program is free software: you can redistribute it and/or modify it under\nthe terms of the Apache Software License version 2, or (at your option) any\nlater version.\n\nThis program is distributed in the hope that it will be useful, but WITHOUT ANY\nWARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A\nPARTICULAR PURPOSE. See the Apache Software License for more details.\n\nYou should have received a copy of the Apache Software License along with this\nprogram. If not, see http://www.apache.org/licenses/LICENSE-2.0.html\n\n## Privacy\nThis project contains only non-sensitive, publicly available data and\ninformation. All material and community participation is covered by the\nSurveillance Platform [Disclaimer](https://github.com/CDCgov/template/blob/master/DISCLAIMER.md)\nand [Code of Conduct](https://github.com/CDCgov/template/blob/master/code-of-conduct.md).\nFor more information about CDC's privacy policy, please visit [http://www.cdc.gov/privacy.html](http://www.cdc.gov/privacy.html).\n\n## Contributing\nAnyone is encouraged to contribute to the project by [forking](https://help.github.com/articles/fork-a-repo)\nand submitting a pull request. (If you are new to GitHub, you might start with a\n[basic tutorial](https://help.github.com/articles/set-up-git).) By contributing\nto this project, you grant a world-wide, royalty-free, perpetual, irrevocable,\nnon-exclusive, transferable license to all users under the terms of the\n[Apache Software License v2](http://www.apache.org/licenses/LICENSE-2.0.html) or\nlater.\n\nBefore you get started, please read the [Developer's Guide to MicrobeTrace.](https://github.com/CDCgov/MicrobeTrace/wiki/z-Development)\n\nAll comments, messages, pull requests, and other submissions received through\nCDC including this GitHub page are subject to the [Presidential Records Act](http://www.archives.gov/about/laws/presidential-records.html)\nand may be archived. Learn more at [http://www.cdc.gov/other/privacy.html](http://www.cdc.gov/other/privacy.html).\n\n## Records\nThis project is not a source of government records, but is a copy to increase\ncollaboration and collaborative potential. All government records will be\npublished through the [CDC web site](http://www.cdc.gov).\n\n## Notices\nPlease refer to [CDC's Template Repository](https://github.com/CDCgov/template)\nfor more information about [contributing to this repository](https://github.com/CDCgov/template/blob/master/CONTRIBUTING.md),\n[public domain notices and disclaimers](https://github.com/CDCgov/template/blob/master/DISCLAIMER.md),\nand [code of conduct](https://github.com/CDCgov/template/blob/master/code-of-conduct.md).\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2FAABoyles%2FMicrobeTrace","html_url":"https://awesome.ecosyste.ms/projects/github.com%2FAABoyles%2FMicrobeTrace","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2FAABoyles%2FMicrobeTrace/lists"}