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Included is a\nsupervised machine learning system which can be trained to recognize complex\nand subtle phenotypes, for automatic scoring of millions of cells.\n\n\u003cdiv align=\"center\"\u003e\n  \u003cimg src=\"http://i.imgur.com/j12EQH5.png\"\u003e\u003cbr\u003e\u003cbr\u003e\n\u003c/div\u003e\n\n## Learn more about CellProfiler Analyst\nThis is the developer site for CellProfiler Analyst. \nThe regular home page for CellProfiler Analyst is here: https://cellprofileranalyst.org/\n\n## Installation\n\nDownload [CellProfiler Analyst](https://cellprofileranalyst.org/releases)\n\nWhen running from source, CellProfiler Analyst requires [JDK 1.8](http://www.oracle.com/technetwork/java/javase/downloads/jdk8-downloads-2133151.html) to be installed (not just JRE).\nCheck the Java path.\n\nPlease note that this is the development branch of CPA and it will be updated on regular basis. \n\nFind all releases [here](https://cellprofileranalyst.org/previously-released-versions-cellprofiler-analyst).\n\nFor a head start, download example dataset here: [Example Dataset for CPA (zipped)](http://d1zymp9ayga15t.cloudfront.net/content/Examplezips/cpa_2.0_example.zip)\n\n## Developer build\n\nBuilding CPA on your machine requires CellProfiler dependencies. Check the wiki\nfor more detailed installation instructions.\n\n* Pandas\n* Seaborn\n* Scikit-learn\n* Python-Javabridge\n* Verlib\n* Python-bioformats\n\n## Documentation\n\n\u003e https://cellprofileranalyst.org/manuals\n\n## Wiki\n\n\u003e https://github.com/CellProfiler/CellProfiler-Analyst/wiki\n\n## Forum\n\nCellProfiler Analyst development is discussed on the CellProfiler Forum\nlist.  \n\n\u003e https://forum.image.sc/tag/cellprofiler-analyst/\n\n## How to file new issues\n\nPlease attach sufficient information to reproduce the bug. For many\nbugs, it is appropriate to attach a properties file, a training set,\nor a screenshot.\n\n## How to cite\n\n*David Dao, Adam N Fraser, Jane Hung, Vebjorn Ljosa, Shantanu Singh and Anne E Carpenter*  \n__[CellProfiler Analyst: interactive data exploration, analysis and classification of large biological image sets][bioinformatics]__  \nBioinformatics (2016) doi:10.1093/bioinformatics/btw390\n\n*Thouis R Jones, In Han Kang, Douglas B Wheeler, Robert A Lindquist, Adam Papallo, David M Sabatini, Polina Golland and Anne E Carpenter*\u003cbr\u003e\n__[CellProfiler Analyst: data exploration and analysis software for complex image-based screens][bmc]__\u003cbr\u003e\nBMC Bioinformatics (2008) doi:10.1186/1471-2105-9-482\n\n\n[bioinformatics]: http://bioinformatics.oxfordjournals.org/content/early/2016/07/24/bioinformatics.btw390\n[bmc]: https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-9-482\n\n\n## Contributors\n\nDavid Dao, Adam Fraser, David Stirling, Pearl Ryder, Beth Cimini, Vebjorn Ljosa, Thouis R. Jones, Jane Hung, Shantanu Singh, Mark Bray, Lee Kamentsky, Anne Carpenter\n\n## Kudos\n\nDavid Logan, Allen Goodman, Alison Kozol, Mohammad Hossein Rohban\n\n*Copyright 2021, The Broad Institute of MIT and Harvard.\nDistributed under the BSD license.*\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2FCellProfiler%2FCellProfiler-Analyst","html_url":"https://awesome.ecosyste.ms/projects/github.com%2FCellProfiler%2FCellProfiler-Analyst","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2FCellProfiler%2FCellProfiler-Analyst/lists"}