{"id":13681192,"url":"https://github.com/JoWatson2011/phosphoRWHN","last_synced_at":"2025-04-30T03:30:42.267Z","repository":{"id":110878158,"uuid":"358652952","full_name":"JoWatson2011/phosphoRWHN","owner":"JoWatson2011","description":"Random Walk on Heterogeneous Network For Functional Analysis of Phosphoproteomics Data","archived":false,"fork":false,"pushed_at":"2022-01-24T10:33:15.000Z","size":22712,"stargazers_count":1,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"master","last_synced_at":"2024-11-12T00:36:28.058Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/JoWatson2011.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2021-04-16T16:06:30.000Z","updated_at":"2024-07-25T00:22:15.000Z","dependencies_parsed_at":"2023-07-21T14:17:31.778Z","dependency_job_id":null,"html_url":"https://github.com/JoWatson2011/phosphoRWHN","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JoWatson2011%2FphosphoRWHN","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JoWatson2011%2FphosphoRWHN/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JoWatson2011%2FphosphoRWHN/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JoWatson2011%2FphosphoRWHN/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/JoWatson2011","download_url":"https://codeload.github.com/JoWatson2011/phosphoRWHN/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":251635020,"owners_count":21619126,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-08-02T13:01:27.612Z","updated_at":"2025-04-30T03:30:41.036Z","avatar_url":"https://github.com/JoWatson2011.png","language":"R","funding_links":[],"categories":["7. Protein Pathway Enrichment"],"sub_categories":["Table of Contents"],"readme":"# RWHN_Phosphoproteomics\nA method to infer the function of individual phosphorylation sites based on phosphoproteomics data, using random walks on heterogeneous networks (RWHN).\n\n# To install package\n\nRun the following in an R session:\n`devtools::install_github(\"JoWatson2011/phosphoRWHN\",  build_vignettes = T)`\n\nThe [Bioconductor](https://www.Bioconductor.org) packages `org.Hs.eg.db`, `GOSemSim`, `GO.db`, `AnnotationDbi` are also required and may need installing separately.\n\n# To view vignette\nRun the following in an R session:\n```\nlibrary(phosphoRWHN)\nvignette(\"phosphoRWHN_MAPKERK\")\n```\n\n\n![Figure 1](https://raw.githubusercontent.com/JoWatson2011/RWHN_Phosphoproteomics/master/figure/Figure1.png?raw=true \"Title\")\n \nManuscript can be viewed [here](https://doi.org/10.1021/acs.jproteome.1c00150):\nWatson, Joanne, Jean-Marc Schwartz, and Chiara Francavilla. \n“Using Multilayer Heterogeneous Networks to Infer Functions of Phosphorylated Sites.” \nJournal of Proteome Research 20, no. 7 (July 2, 2021): 3532–48. https://doi.org/10.1021/acs.jproteome.1c00150.\n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2FJoWatson2011%2FphosphoRWHN","html_url":"https://awesome.ecosyste.ms/projects/github.com%2FJoWatson2011%2FphosphoRWHN","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2FJoWatson2011%2FphosphoRWHN/lists"}