{"id":13688147,"url":"https://github.com/MaximilianKohler/HumanMicrobiome","last_synced_at":"2025-05-01T16:30:32.169Z","repository":{"id":37650027,"uuid":"187394095","full_name":"MaximilianKohler/HumanMicrobiome","owner":"MaximilianKohler","description":"Human Microbiome wiki","archived":false,"fork":false,"pushed_at":"2023-08-06T20:44:01.000Z","size":100,"stargazers_count":153,"open_issues_count":2,"forks_count":10,"subscribers_count":13,"default_branch":"master","last_synced_at":"2024-08-03T15:08:39.989Z","etag":null,"topics":["health","microbiome","science"],"latest_commit_sha":null,"homepage":"https://HumanMicrobiome.info","language":null,"has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/MaximilianKohler.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null}},"created_at":"2019-05-18T18:48:20.000Z","updated_at":"2024-07-05T13:14:00.000Z","dependencies_parsed_at":"2022-07-12T16:42:22.049Z","dependency_job_id":null,"html_url":"https://github.com/MaximilianKohler/HumanMicrobiome","commit_stats":{"total_commits":57,"total_committers":1,"mean_commits":57.0,"dds":0.0,"last_synced_commit":"57bb26a28c3b55e2533fdbf49279d64f2223d2d7"},"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/MaximilianKohler%2FHumanMicrobiome","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/MaximilianKohler%2FHumanMicrobiome/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/MaximilianKohler%2FHumanMicrobiome/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/MaximilianKohler%2FHumanMicrobiome/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/MaximilianKohler","download_url":"https://codeload.github.com/MaximilianKohler/HumanMicrobiome/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":224266407,"owners_count":17283128,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["health","microbiome","science"],"created_at":"2024-08-02T15:01:07.803Z","updated_at":"2025-05-01T16:30:32.163Z","avatar_url":"https://github.com/MaximilianKohler.png","language":null,"funding_links":[],"categories":["Others"],"sub_categories":[],"readme":"# Human Microbiome Wiki\n\n[Library of research on the human microbiome](https://humanmicrobiome.info/). Detailing all the ways our microbiomes impact our health, function, and development. Providing answers on how we can maintain or achieve a healthy, eubiotic gut microbiome, and how to prevent and correct dysbiosis. \n\nI have also now set up a new **[Human Microbiome Community Forum](https://forum.humanmicrobiome.info/)** -- https://forum.humanmicrobiome.info. Studies, articles, and evidence-based discussion on the human microbiome, its impacts on health \u0026 society, and what we can do.\n\nThe [Human Microbiome Wiki](https://humanmicrobiome.info/) was created with the idea in mind that misinformation is harmful, and that it's important to have easily accessible hubs of up-to-date, accurate information on subjects. There is widespread misinformation about so many topics, including the microbiome, probiotics, diet, etc. Since I've been following the microbiome literature daily for many years I should be able to help stop the spread of misinformation for topics relating to the human microbiome. \n\nIf you have criticisms, suggestions, additions, etc., please [submit them](https://github.com/MaximilianKohler/HumanMicrobiome/issues). \n\nI will try to keep this site accessible for both lay people and professionals. I don't add every existing study or the wiki would become overbloated and unusable. To see all studies for a given topic you'll need to do a literature search via pubmed or google scholar. \n\nPlease note that I am a layperson and do not have deep technical knowledge. Rather, I have [a broad understanding of human health and development, and the gut microbiome's impacts on the entire body](https://medium.com/@MaximilianKohler/a-critical-look-at-the-current-and-longstanding-ethos-of-childbearing-the-repercussions-its-been-6e37f7f7b13f), with a [focus on FMT](https://maximiliankohler.blogspot.com/p/blog-page.html). And since most doctors and researchers don't seem to follow the literature closely it seemed like this is a vacant and important niche I could/should fill. If you are interested in collaboration, expanding, moving the site, etc. feel free to let me know. \n\n[Me on LinkedIn](https://www.linkedin.com/in/michael-harrop-25487b132/).\n\n---\n\n[This site](https://humanmicrobiome.info/) is currently built on [MkDocs](https://www.mkdocs.org/). It has lots of [themes](https://github.com/mkdocs/mkdocs/wiki/MkDocs-Themes). Currently using [Material theme](https://github.com/squidfunk/mkdocs-material). Let me know if you have other suggestions. \n\nStatic sites can be hosted free on Github Pages, Cloudflare pages, or Netlify. \n\n**Static site generators**:\n\n* Material theme - I like it a lot and it's easy to customize, but the [sidebars collapse too soon](https://github.com/squidfunk/mkdocs-material/discussions/3210#discussioncomment-2342214), and [the search is quite bad](https://github.com/squidfunk/mkdocs-material/discussions/4384#discussioncomment-4877684). \n* [Read the docs](https://www.mkdocs.org/user-guide/choosing-your-theme/#readthedocs) - MkDocs theme. I like it but the sidebar was a little buggy when it was long enough to scroll. \n* Hugo: [Book theme](https://themes.gohugo.io/themes/hugo-book/) fixes the issues I have with Material theme -- the sidebars don't collapse too soon, and the search is better. But it loses other features and is less customizable _(for novices at least)_ overall; Eg: [the sidebar layout](https://github.com/alex-shpak/hugo-book/issues/446).\n* I like the [Linode docs](https://gohugo.io/showcase/linode/) layout, but the search is not that good. And it's not a selectable theme. \n* Bookstack - nice but seems to require heavy technical expertise to customize. Also, not static so not free to host. \n* Gatsby: ? https://www.gatsbyjs.com/docs/themes/\n* Jekyll: ? https://jekyllrb.com/docs/themes/\n* Next.js: the search isn't that good; can't [find links](https://nextjs.org/docs/advanced-features/measuring-performance#sending-results-to-analytics).\n* Eleventy (11ty): simple? https://www.11ty.dev/ - doesn't seem to have a built-in search. Their [docs](https://www.11ty.dev/docs/quicktips/edit-on-github-links/) uses [Pagefind](https://pagefind.app/) which can't find links. \n\n\n\nOriginally [ported from Reddit](https://web.archive.org/web/20181101093145/https://old.reddit.com/r/HumanMicrobiome/wiki/index) due to [a variety of problems with Reddit](https://archive.fo/jzTPu). Used [a github wiki](https://github.com/MaximilianKohler/HumanMicrobiome/wiki/intro) for a while before moving it to [its own site](https://humanmicrobiome.info/). \n\n\n\u0026#x200B;\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2FMaximilianKohler%2FHumanMicrobiome","html_url":"https://awesome.ecosyste.ms/projects/github.com%2FMaximilianKohler%2FHumanMicrobiome","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2FMaximilianKohler%2FHumanMicrobiome/lists"}