{"id":13680836,"url":"https://github.com/MonashBioinformaticsPlatform/bioconda-tutorial","last_synced_at":"2025-04-30T00:31:03.811Z","repository":{"id":79205845,"uuid":"119624759","full_name":"MonashBioinformaticsPlatform/bioconda-tutorial","owner":"MonashBioinformaticsPlatform","description":"A quick overview of how to use Bioconda, and create recipes","archived":false,"fork":false,"pushed_at":"2018-12-12T05:36:40.000Z","size":1883,"stargazers_count":6,"open_issues_count":0,"forks_count":4,"subscribers_count":6,"default_branch":"master","last_synced_at":"2024-11-11T23:37:51.884Z","etag":null,"topics":["bioconda","bioinformatics","tutorial"],"latest_commit_sha":null,"homepage":"https://monashbioinformaticsplatform.github.io/bioconda-tutorial/","language":"Jupyter Notebook","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"cc0-1.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/MonashBioinformaticsPlatform.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null}},"created_at":"2018-01-31T02:42:20.000Z","updated_at":"2024-03-28T17:58:58.000Z","dependencies_parsed_at":"2023-04-18T11:06:39.571Z","dependency_job_id":null,"html_url":"https://github.com/MonashBioinformaticsPlatform/bioconda-tutorial","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/MonashBioinformaticsPlatform%2Fbioconda-tutorial","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/MonashBioinformaticsPlatform%2Fbioconda-tutorial/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/MonashBioinformaticsPlatform%2Fbioconda-tutorial/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/MonashBioinformaticsPlatform%2Fbioconda-tutorial/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/MonashBioinformaticsPlatform","download_url":"https://codeload.github.com/MonashBioinformaticsPlatform/bioconda-tutorial/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":251607470,"owners_count":21616768,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["bioconda","bioinformatics","tutorial"],"created_at":"2024-08-02T13:01:22.656Z","updated_at":"2025-04-30T00:30:58.765Z","avatar_url":"https://github.com/MonashBioinformaticsPlatform.png","language":"Jupyter Notebook","readme":"# Conda and Bioconda for bioinformatics tools: a short tutorial\n\n\u003ca rel=\"license\" href=\"http://creativecommons.org/licenses/by/4.0/\"\u003e\u003cimg alt=\"Creative Commons License\" style=\"border-width:0\" src=\"https://i.creativecommons.org/l/by/4.0/80x15.png\" /\u003e\u003c/a\u003e\n\n[![Binder](https://mybinder.org/badge.svg)](https://mybinder.org/v2/gh/MonashBioinformaticsPlatform/bioconda-tutorial/master?filepath=Bioconda_Installation.ipynb)\n\nThis tutorial covers the basics of setting up the `conda` tool to install bioinformatics tools from [Bioconda](https://bioconda.github.io/) and producing \"reproducible environments\" as a foundation for your own analysis or pipeline. You don't need `sudo`.\n\n* View the [tutorial notebook](https://github.com/MonashBioinformaticsPlatform/bioconda-tutorial/blob/master/Bioconda_Installation.ipynb).\n* Or as [slides](https://monashbioinformaticsplatform.github.io/bioconda-tutorial/#/)\n\n# Requirements:\n\nJust reading the [Jupyter notebook](https://github.com/MonashBioinformaticsPlatform/bioconda-tutorial/blob/master/Bioconda_Installation.ipynb) right here on Github and cut'n'pasting into your terminal is probably all you need.\n\nHowever, if you'd like to run this notebook on your computer, you will need:\n\n* Jupyter Notebook (or JupyterLab)\n* Jupyter Bash Kernel: https://github.com/takluyver/bash_kernel\n\nIf you've cloned the repository, to view the slides locally.\n```bash\nrun_slides.h\n```\n","funding_links":[],"categories":["1B. Learning Resources - Programming"],"sub_categories":["Table of Contents"],"project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2FMonashBioinformaticsPlatform%2Fbioconda-tutorial","html_url":"https://awesome.ecosyste.ms/projects/github.com%2FMonashBioinformaticsPlatform%2Fbioconda-tutorial","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2FMonashBioinformaticsPlatform%2Fbioconda-tutorial/lists"}