{"id":14111541,"url":"https://github.com/Nazeeefa/awesome-data-steward-resources","last_synced_at":"2025-08-01T12:33:04.932Z","repository":{"id":86787677,"uuid":"298294673","full_name":"Nazeeefa/awesome-data-steward-resources","owner":"Nazeeefa","description":"A list of resources to learn about data stewardship","archived":false,"fork":false,"pushed_at":"2025-04-02T17:43:36.000Z","size":73,"stargazers_count":14,"open_issues_count":0,"forks_count":1,"subscribers_count":3,"default_branch":"master","last_synced_at":"2025-07-02T12:03:03.407Z","etag":null,"topics":["bioinformatics","data-management","data-stewardship","fair-principles"],"latest_commit_sha":null,"homepage":"","language":null,"has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/Nazeeefa.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2020-09-24T13:54:38.000Z","updated_at":"2025-04-05T13:30:54.000Z","dependencies_parsed_at":"2025-04-23T20:00:54.672Z","dependency_job_id":"698d9434-fef5-4454-ba61-07c1e020a4b9","html_url":"https://github.com/Nazeeefa/awesome-data-steward-resources","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/Nazeeefa/awesome-data-steward-resources","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Nazeeefa%2Fawesome-data-steward-resources","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Nazeeefa%2Fawesome-data-steward-resources/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Nazeeefa%2Fawesome-data-steward-resources/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Nazeeefa%2Fawesome-data-steward-resources/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Nazeeefa","download_url":"https://codeload.github.com/Nazeeefa/awesome-data-steward-resources/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Nazeeefa%2Fawesome-data-steward-resources/sbom","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":265419614,"owners_count":23761846,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["bioinformatics","data-management","data-stewardship","fair-principles"],"created_at":"2024-08-14T10:03:21.084Z","updated_at":"2025-08-01T12:33:04.912Z","avatar_url":"https://github.com/Nazeeefa.png","language":null,"funding_links":[],"categories":["Other Lists"],"sub_categories":["TeX Lists"],"readme":"# awesome-data-steward-resources\nA list of useful resources, for beginners and experts especially those in the field of bioinformatics, to learn/revise knowledge about data stewardship.\n\n## How to Contribute\nContribute by submitting [pull requests](https://github.com/Nazeeefa/awesome-data-steward-resources/pulls), or posting suggestions as [issues](https://github.com/Nazeeefa/awesome-data-steward-resources/issues). Thank you.\n\n#\n\n## Key\n\n- Videos 🎥 \n- GuideLines 🕸\n- FAIR Principles 🍀\n- Presentation Slides 🖥\n   - presented by Nazeefa 🐼 \n- Computational Tools 🛠\n\n## Articles\n\n### FAIR Principles 🍀\n\n- [Ten simple rules for getting and giving credit for data](https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1010476)\n- [Taking a fresh look at FAIR for research software](https://doi.org/10.1016/j.patter.2021.100222)\n- [FAIRness Literacy: The Achilles’ Heel of Applying FAIR Principles](https://datascience.codata.org/articles/10.5334/dsj-2020-032/)\n- [The FAIR Guiding Principles for scientific data management and stewardship](https://www.nature.com/articles/sdata201618)\n\n### Data Management/Stewardship ✨\n\n- [Foundational Practices of Research Data Management](https://riojournal.com/article/56508/)\n- [Open Data Practices among Users of Primary Biodiversity Data](https://academic.oup.com/bioscience/advance-article/doi/10.1093/biosci/biab072/6348370)\n- 💻 🐼 [Data Steward Career Survey, ELIXIR Europe](https://drive.google.com/file/d/1vPctZGJHLWZQwdDb47XyS-m6-ZeTx6aq/view?usp=sharing)\n- 💻 🐼 [ELIXIR's RDM Knowledge Source (RDMkit)](https://docs.google.com/presentation/d/1D7F6Ok8xTTzDcyCsLTk9VHSzyJSzItqSwtJEp88J5wQ/edit?usp=sharing)\n\n\n### Life Sciences: General Articles 🧬\n\n- [5 rules for good data management in the life sciences](https://www.natureindex.com/news-blog/five-rules-for-good-data-management-in-the-life-sciences) \n- [FAIRly big: A framework for computationally reproducible processing of large-scale data](https://www.biorxiv.org/content/10.1101/2021.10.12.464122v1)\n- [Using “Big Data” in the Cost-Effectiveness Analysis of Next-Generation Sequencing Technologies: Challenges and Potential Solutions](https://www.valueinhealthjournal.com/article/S1098-3015(18)32265-4/fulltext) - covers data collection and management challenges\n- [Experimenting with reproducibility: a case study of robustness in bioinformatics](https://academic.oup.com/gigascience/article/7/7/giy077/5046609)\n- [Comparability and reproducibility of biomedical data ](https://academic.oup.com/bib/article/14/4/391/192999)\n- [The role of metadata in reproducible computational research](https://www.cell.com/patterns/pdf/S2666-3899(21)00170-7.pdf) - PDF File\n- [Harmonizing semantic annotations for computational models in biology](https://academic.oup.com/bib/article/20/2/540/5164345)\n- [Purpose definition as a crucial step for determining the legal basis under the GDPR: implications for scientific research](https://academic.oup.com/jlb/article/11/1/lsae001/7595866)\n\n#### Bioinformatics: Domain-Specific\n\n- [Road to FAIR genomes: a gap Analyse of NGS data generation and sharing in the Netherlands](https://pubmed.ncbi.nlm.nih.gov/35505836/)\n- [Implementing FAIR data management within the German Network for Bioinformatics Infrastructure](https://academic.oup.com/bib/advance-article/doi/10.1093/bib/bbab010/6135008)\n- [Mapping single-cell data to reference atlases by transfer learning](https://www.nature.com/articles/s41587-021-01001-7)\n- [Reproducibility standards for machine learning in the life sciences](https://www.nature.com/articles/s41592-021-01256-7)\n- [Moving towards reproducible machine learning](https://www.nature.com/articles/s43588-021-00152-6)\n- [Community curation of bioinformatics software and data resources](https://academic.oup.com/bib/article/21/5/1697/5560007)\n\n### Miscellaneous\n\n- [A graduate student perspective on overcoming barriers to interacting with open-source software](https://www.facetsjournal.com/doi/10.1139/facets-2019-0020)\n- [What senior academics can do to support reproducible and open research: a short, three-step guide](https://psyarxiv.com/jyfr7)\n\n#\n\n### GuideLines 🕸\n\n- [FAIR Cookbook](https://fairplus.github.io/the-fair-cookbook/content/home.html)\n- [Top 10 FAIR Data \u0026 Software Things](https://librarycarpentry.org/Top-10-FAIR/)\n- 🎥 [Developing an ELIXIR Software Management plan for use in Life Science Project](https://elixir-europe.org/events/webinar-software-management-plans)\n\n#\n\n### Computational Tools for FAIR Data 🛠\n\n- [A Python library for probabilistic analysis of single-cell omics data](https://www.nature.com/articles/s41587-021-01206-w)\n- [BAMboozle removes genetic variation from human sequence data for open data sharing](https://www.nature.com/articles/s41467-021-26152-8)\n- [Tools to measure FAIRness](https://fairassist.org/#!/)\n- [liftr - tool to containerize R Markdown documents](https://liftr.me/)\n- [METAGENOTE: a simplified web platform for metadata annotation of genomic samples and streamlined submission to NCBI’s sequence read archive](https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-020-03694-0)\n- [EMBL-EBI Ontology Xref Service (OxO)](https://www.ebi.ac.uk/spot/oxo/)\n- [BioAnnotate](https://github.com/ababaian/BioAnnotate)\n- 🖥 [RO-Crate (FAIR Computational Workflows)](https://zenodo.org/record/4011999)\n- [MDEmic: a metadata annotation tool to facilitate management of FAIR image data in the bioimaging community](https://www.nature.com/articles/s41592-021-01288-z) \n- [The FAANG Data Portal: Global, Open-Access, \"FAIR\", and Richly Validated Genotype to Phenotype Data for High-Quality Functional Annotation of Animal Genomes.](https://www.frontiersin.org/articles/10.3389/fgene.2021.639238/full)\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2FNazeeefa%2Fawesome-data-steward-resources","html_url":"https://awesome.ecosyste.ms/projects/github.com%2FNazeeefa%2Fawesome-data-steward-resources","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2FNazeeefa%2Fawesome-data-steward-resources/lists"}