{"id":13857375,"url":"https://github.com/Nowosad/motif","last_synced_at":"2025-07-13T21:32:27.873Z","repository":{"id":37397533,"uuid":"212118705","full_name":"Nowosad/motif","owner":"Nowosad","description":"Pattern-based spatial analysis in R","archived":false,"fork":false,"pushed_at":"2024-08-23T14:14:59.000Z","size":59686,"stargazers_count":63,"open_issues_count":12,"forks_count":2,"subscribers_count":3,"default_branch":"main","last_synced_at":"2024-11-21T20:51:33.205Z","etag":null,"topics":["categorical-raster","global-ecology","landscape-ecology","r","spatial"],"latest_commit_sha":null,"homepage":"https://jakubnowosad.com/motif/","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/Nowosad.png","metadata":{"files":{"readme":"README.Rmd","changelog":"NEWS.md","contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2019-10-01T14:33:27.000Z","updated_at":"2024-08-23T14:08:34.000Z","dependencies_parsed_at":"2023-01-20T21:18:33.685Z","dependency_job_id":"953e34ff-6815-40dc-9ce8-69392cc88a32","html_url":"https://github.com/Nowosad/motif","commit_stats":{"total_commits":480,"total_committers":1,"mean_commits":480.0,"dds":0.0,"last_synced_commit":"d3e820aaed688cd945da346919c54cf6144bf1e3"},"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Nowosad%2Fmotif","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Nowosad%2Fmotif/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Nowosad%2Fmotif/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Nowosad%2Fmotif/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Nowosad","download_url":"https://codeload.github.com/Nowosad/motif/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":225920303,"owners_count":17545467,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["categorical-raster","global-ecology","landscape-ecology","r","spatial"],"created_at":"2024-08-05T03:01:34.907Z","updated_at":"2024-11-22T15:30:37.297Z","avatar_url":"https://github.com/Nowosad.png","language":"R","funding_links":[],"categories":["R"],"sub_categories":[],"readme":"---\noutput: github_document\n---\n\n\u003c!-- README.md is generated from README.Rmd. Please edit that file --\u003e\n\n```{r, include = FALSE}\nknitr::opts_chunk$set(\n  collapse = TRUE,\n  comment = \"#\u003e\",\n  fig.path = \"man/figures/README-\",\n  out.width = \"100%\"\n)\n```\n\n# motif \u003cimg src=\"man/figures/logo.png\" align=\"right\" width=\"150\" /\u003e\n\n\u003c!-- badges: start --\u003e\n[![CRAN status](http://www.r-pkg.org/badges/version/motif)](https://cran.r-project.org/package=motif)\n[![GitHub action build status](https://github.com/Nowosad/motif/workflows/pkgdown/badge.svg)](https://github.com/Nowosad/motif/actions)\n[![Codecov test coverage](https://codecov.io/gh/Nowosad/motif/branch/master/graph/badge.svg)](https://app.codecov.io/gh/Nowosad/motif?branch=master)\n[![CRAN RStudio mirror downloads](http://cranlogs.r-pkg.org/badges/motif)](https://cran.r-project.org/package=motif)\n\u003c!-- badges: end --\u003e\n\nThe **motif** package implements and extends ideas of the pattern-based spatial analysis in R.\nIt describes spatial patterns of categorical raster data for any defined regular and irregular areas. \nPatterns are represented quantitatively using built-in signatures based on co-occurrence matrices but also allows for any user-defined functions. \nIt enables spatial analysis such as search, change detection, and clustering to be performed on spatial patterns.\n\n## Installation\n\nYou can install the released version of motif from [CRAN](https://CRAN.R-project.org) with:\n\n``` r\ninstall.packages(\"motif\")\n```\n\nAnd the development version from [GitHub](https://github.com/) with:\n\n``` r\n# install.packages(\"remotes\")\nremotes::install_github(\"Nowosad/motif\")\n```\n\n## Documentation\n\nSee the package's vignettes:\n\n1. [Introduction to the motif package](https://jakubnowosad.com/motif/articles/v1_intro.html)\n2. [Types of spatial patterns' signatures](https://jakubnowosad.com/motif/articles/v2_signatures.html)\n3. [Spatial patterns' search](https://jakubnowosad.com/motif/articles/v3_search.html)\n4. [Spatial patterns' comparision](https://jakubnowosad.com/motif/articles/v4_compare.html)\n5. [Spatial patterns' clustering](https://jakubnowosad.com/motif/articles/v5_cluster.html)\n6. [Extracting the proportion of different classes in many regular local landscapes](https://jakubnowosad.com/motif/articles/v6_composition.html)\n\n## Contribution\n\nContributions to this package are welcome.\nThe preferred method of contribution is through a GitHub pull request. \nFeel free to contact us by creating [an issue](https://github.com/Nowosad/motif/issues). \n\n## Citation\n\nTo cite the `motif` package in publications, please use [this paper](https://doi.org/10.1007/s10980-020-01135-0):\n\nNowosad, J. Motif: an open-source R tool for pattern-based spatial analysis. Landscape Ecol (2021). https://doi.org/10.1007/s10980-020-01135-0\n\nLaTeX/BibTeX version can be obtained with:\n```\nlibrary(motif)\ncitation(\"motif\")\n```\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2FNowosad%2Fmotif","html_url":"https://awesome.ecosyste.ms/projects/github.com%2FNowosad%2Fmotif","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2FNowosad%2Fmotif/lists"}