{"id":30987645,"url":"https://github.com/PIA-Group/BioSPPy","last_synced_at":"2025-09-12T16:34:43.181Z","repository":{"id":44454307,"uuid":"39646241","full_name":"PIA-Group/BioSPPy","owner":"PIA-Group","description":"Biosignal Processing in Python","archived":true,"fork":false,"pushed_at":"2022-08-02T13:35:18.000Z","size":2631,"stargazers_count":613,"open_issues_count":3,"forks_count":280,"subscribers_count":35,"default_branch":"master","last_synced_at":"2025-05-30T12:17:40.578Z","etag":null,"topics":["biosignals","data-science","physiological-computing","python","signal-processing"],"latest_commit_sha":null,"homepage":null,"language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/PIA-Group.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2015-07-24T16:57:31.000Z","updated_at":"2025-05-26T08:36:33.000Z","dependencies_parsed_at":"2022-08-30T08:31:43.524Z","dependency_job_id":null,"html_url":"https://github.com/PIA-Group/BioSPPy","commit_stats":null,"previous_names":[],"tags_count":9,"template":false,"template_full_name":null,"purl":"pkg:github/PIA-Group/BioSPPy","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/PIA-Group%2FBioSPPy","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/PIA-Group%2FBioSPPy/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/PIA-Group%2FBioSPPy/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/PIA-Group%2FBioSPPy/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/PIA-Group","download_url":"https://codeload.github.com/PIA-Group/BioSPPy/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/PIA-Group%2FBioSPPy/sbom","scorecard":{"id":106829,"data":{"date":"2025-08-11","repo":{"name":"github.com/PIA-Group/BioSPPy","commit":"77550221f77e024459840ece540b1e017ed99e57"},"scorecard":{"version":"v5.2.1-40-gf6ed084d","commit":"f6ed084d17c9236477efd66e5b258b9d4cc7b389"},"score":2.5,"checks":[{"name":"Token-Permissions","score":-1,"reason":"No tokens found","details":null,"documentation":{"short":"Determines if the project's workflows follow the principle of least privilege.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#token-permissions"}},{"name":"Code-Review","score":2,"reason":"Found 4/19 approved changesets -- score normalized to 2","details":null,"documentation":{"short":"Determines if the project requires human code review before pull requests (aka merge requests) are merged.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#code-review"}},{"name":"Packaging","score":-1,"reason":"packaging workflow not detected","details":["Warn: no GitHub/GitLab publishing workflow detected."],"documentation":{"short":"Determines if the project is published as a package that others can easily download, install, easily update, and uninstall.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#packaging"}},{"name":"Maintained","score":0,"reason":"project is archived","details":["Warn: Repository is archived."],"documentation":{"short":"Determines if the project is \"actively maintained\".","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#maintained"}},{"name":"Dangerous-Workflow","score":-1,"reason":"no workflows found","details":null,"documentation":{"short":"Determines if the project's GitHub Action workflows avoid dangerous patterns.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#dangerous-workflow"}},{"name":"Binary-Artifacts","score":10,"reason":"no binaries found in the repo","details":null,"documentation":{"short":"Determines if the project has generated executable (binary) artifacts in the source repository.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#binary-artifacts"}},{"name":"CII-Best-Practices","score":0,"reason":"no effort to earn an OpenSSF best practices badge detected","details":null,"documentation":{"short":"Determines if the project has an OpenSSF (formerly CII) Best Practices Badge.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#cii-best-practices"}},{"name":"Pinned-Dependencies","score":-1,"reason":"no dependencies found","details":null,"documentation":{"short":"Determines if the project has declared and pinned the dependencies of its build process.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#pinned-dependencies"}},{"name":"Security-Policy","score":0,"reason":"security policy file not detected","details":["Warn: no security policy file detected","Warn: no security file to analyze","Warn: no security file to analyze","Warn: no security file to analyze"],"documentation":{"short":"Determines if the project has published a security policy.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#security-policy"}},{"name":"Fuzzing","score":0,"reason":"project is not fuzzed","details":["Warn: no fuzzer integrations found"],"documentation":{"short":"Determines if the project uses fuzzing.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#fuzzing"}},{"name":"License","score":9,"reason":"license file detected","details":["Info: project has a license file: LICENSE:0","Warn: project license file does not contain an FSF or OSI license."],"documentation":{"short":"Determines if the project has defined a license.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#license"}},{"name":"Signed-Releases","score":-1,"reason":"no releases found","details":null,"documentation":{"short":"Determines if the project cryptographically signs release artifacts.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#signed-releases"}},{"name":"Branch-Protection","score":0,"reason":"branch protection not enabled on development/release branches","details":["Warn: branch protection not enabled for branch 'master'"],"documentation":{"short":"Determines if the default and release branches are protected with GitHub's branch protection settings.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#branch-protection"}},{"name":"Vulnerabilities","score":4,"reason":"6 existing vulnerabilities detected","details":["Warn: Project is vulnerable to: PYSEC-2022-288 / GHSA-6hrg-qmvc-2xh8","Warn: Project is vulnerable to: PYSEC-2020-107 / GHSA-jjw5-xxj6-pcv5","Warn: Project is vulnerable to: PYSEC-2024-110 / GHSA-jw8x-6495-233v","Warn: Project is vulnerable to: PYSEC-2020-108","Warn: Project is vulnerable to: PYSEC-2023-102","Warn: Project is vulnerable to: PYSEC-2023-114"],"documentation":{"short":"Determines if the project has open, known unfixed vulnerabilities.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#vulnerabilities"}},{"name":"SAST","score":0,"reason":"SAST tool is not run on all commits -- score normalized to 0","details":["Warn: 0 commits out of 16 are checked with a SAST tool"],"documentation":{"short":"Determines if the project uses static code analysis.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#sast"}}]},"last_synced_at":"2025-08-15T11:15:18.301Z","repository_id":44454307,"created_at":"2025-08-15T11:15:18.301Z","updated_at":"2025-08-15T11:15:18.301Z"},"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274838807,"owners_count":25359392,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-12T02:00:09.324Z","response_time":60,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["biosignals","data-science","physiological-computing","python","signal-processing"],"created_at":"2025-09-12T16:34:29.861Z","updated_at":"2025-09-12T16:34:43.061Z","avatar_url":"https://github.com/PIA-Group.png","language":"Python","readme":"\u003e This repository is archived. The BioSPPy toolbox is now maintained at [scientisst/BioSPPy](https://github.com/scientisst/BioSPPy).\n\n# BioSPPy - Biosignal Processing in Python\n\n*A toolbox for biosignal processing written in Python.*\n\n[![Image](https://github.com/PIA-Group/BioSPPy/raw/master/docs/logo/logo_400.png \"I know you're listening! - xkcd.com/525\")](http://biosppy.readthedocs.org/)\n\nThe toolbox bundles together various signal processing and pattern recognition\nmethods geared towards the analysis of biosignals.\n\nHighlights:\n\n- Support for various biosignals: BVP, ECG, EDA, EEG, EMG, PCG, PPG, Respiration\n- Signal analysis primitives: filtering, frequency analysis\n- Clustering\n- Biometrics\n\nDocumentation can be found at: \u003chttp://biosppy.readthedocs.org/\u003e\n\n## Installation\n\nInstallation can be easily done with `pip`:\n\n```bash\n$ pip install biosppy\n```\n\n## Simple Example\n\nThe code below loads an ECG signal from the `examples` folder, filters it,\nperforms R-peak detection, and computes the instantaneous heart rate.\n\n```python\nfrom biosppy import storage\nfrom biosppy.signals import ecg\n\n# load raw ECG signal\nsignal, mdata = storage.load_txt('./examples/ecg.txt')\n\n# process it and plot\nout = ecg.ecg(signal=signal, sampling_rate=1000., show=True)\n```\n\nThis should produce a plot similar to the one below.\n\n[![Image](https://github.com/PIA-Group/BioSPPy/raw/master/docs/images/ECG_summary.png \"ECG Summary Plot\")]()\n\n## Dependencies\n\n- bidict\n- h5py\n- matplotlib\n- numpy\n- scikit-learn\n- scipy\n- shortuuid\n- six\n- joblib\n\n## Citing\nPlease use the following if you need to cite BioSPPy:\n\n- Carreiras C, Alves AP, Lourenço A, Canento F, Silva H, Fred A, *et al.*\n  **BioSPPy - Biosignal Processing in Python**, 2015-,\n  https://github.com/PIA-Group/BioSPPy/ [Online; accessed ```\u003cyear\u003e-\u003cmonth\u003e-\u003cday\u003e```].\n\n```latex\n@Misc{,\n  author = {Carlos Carreiras and Ana Priscila Alves and Andr\\'{e} Louren\\c{c}o and Filipe Canento and Hugo Silva and Ana Fred and others},\n  title = {{BioSPPy}: Biosignal Processing in {Python}},\n  year = {2015--},\n  url = \"https://github.com/PIA-Group/BioSPPy/\",\n  note = {[Online; accessed \u003ctoday\u003e]}\n}\n```\n\n## License\n\nBioSPPy is released under the BSD 3-clause license. See LICENSE for more details.\n\n## Disclaimer\n\nThis program is distributed in the hope it will be useful and provided\nto you \"as is\", but WITHOUT ANY WARRANTY, without even the implied\nwarranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. This\nprogram is NOT intended for medical diagnosis. We expressly disclaim any\nliability whatsoever for any direct, indirect, consequential, incidental\nor special damages, including, without limitation, lost revenues, lost\nprofits, losses resulting from business interruption or loss of data,\nregardless of the form of action or legal theory under which the\nliability may be asserted, even if advised of the possibility of such\ndamages.\n","funding_links":[],"categories":["📬 Contact","Software"],"sub_categories":["Python Toolboxes"],"project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2FPIA-Group%2FBioSPPy","html_url":"https://awesome.ecosyste.ms/projects/github.com%2FPIA-Group%2FBioSPPy","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2FPIA-Group%2FBioSPPy/lists"}