{"id":13689527,"url":"https://github.com/ReproNim/neurodocker","last_synced_at":"2025-05-02T00:30:30.001Z","repository":{"id":41344294,"uuid":"88654995","full_name":"ReproNim/neurodocker","owner":"ReproNim","description":"Generate custom Docker and Singularity images, and minimize existing containers","archived":false,"fork":false,"pushed_at":"2025-05-01T00:06:42.000Z","size":8758,"stargazers_count":339,"open_issues_count":14,"forks_count":97,"subscribers_count":18,"default_branch":"master","last_synced_at":"2025-05-01T01:20:38.827Z","etag":null,"topics":["apptainer","containers","docker","dockerfile","linux","neuroscience","nipype","reproducible-research","science","singularity-container"],"latest_commit_sha":null,"homepage":"https://www.repronim.org/neurodocker/","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"apache-2.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/ReproNim.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2017-04-18T18:00:49.000Z","updated_at":"2025-04-25T01:22:04.000Z","dependencies_parsed_at":"2023-02-18T10:15:19.350Z","dependency_job_id":"e216fe74-9f3c-4477-9bc1-73dcebb2df42","html_url":"https://github.com/ReproNim/neurodocker","commit_stats":{"total_commits":1188,"total_committers":47,"mean_commits":25.27659574468085,"dds":0.3526936026936027,"last_synced_commit":"b496ce7d9b6616bb30846b2c6b8b7a6e1fcc853e"},"previous_names":[],"tags_count":24,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ReproNim%2Fneurodocker","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ReproNim%2Fneurodocker/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ReproNim%2Fneurodocker/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ReproNim%2Fneurodocker/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/ReproNim","download_url":"https://codeload.github.com/ReproNim/neurodocker/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":251807061,"owners_count":21646990,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["apptainer","containers","docker","dockerfile","linux","neuroscience","nipype","reproducible-research","science","singularity-container"],"created_at":"2024-08-02T15:01:51.285Z","updated_at":"2025-05-02T00:30:29.991Z","avatar_url":"https://github.com/ReproNim.png","language":"Python","readme":"# Neurodocker\n\n[![build status](https://github.com/ReproNim/neurodocker/actions/workflows/pull-request.yml/badge.svg)](https://github.com/ReproNim/neurodocker/actions/workflows/pull-request.yml)\n[![docker pulls](https://img.shields.io/docker/pulls/repronim/neurodocker.svg)](https://hub.docker.com/r/repronim/neurodocker/)\n[![python versions](https://img.shields.io/pypi/pyversions/neurodocker.svg)](https://pypi.org/project/neurodocker/)\n[![DOI](https://zenodo.org/badge/88654995.svg)](https://zenodo.org/badge/latestdoi/88654995)\n\n_Neurodocker_ is a command-line program that generates custom Dockerfiles and Singularity recipes for neuroimaging and minifies existing containers.\n\nPlease see our website https://www.repronim.org/neurodocker for more information.\n\nSee our [list of supported software](https://www.repronim.org/neurodocker/user_guide/examples.html#supported-software)\n\n## Build status\n\nYou can check the status of the build of the Docker images\nfor several of the neuroimaging software packages that are supported by _Neurodocker_\non [this page](https://github.com/ReproNim/neurodocker/blob/test_docker_build/docs/README.md). This may help with identifying base images that work well for your\nuse case.\n\n# Installation\n\nUse the _Neurodocker_ Docker image (recommended):\n\n```shell\ndocker run --rm repronim/neurodocker:latest --help\n```\n\nThe Docker images were moved to [repronim/neurodocker](https://hub.docker.com/r/repronim/neurodocker) from [kaczmarj/neurodocker](https://hub.docker.com/r/kaczmarj/neurodocker).\n\n\nThis project can also be installed with `pip`:\n\n```shell\npip install neurodocker\nneurodocker --help\n```\n\nIf the `pip install` command above gives a permissions error, install as a non-root user:\n\n```shell\npip install --user neurodocker\n```\n\n_Note_: it is not yet possible to minimize Docker containers using the _Neurodocker_ Docker image.\n\n\n# Developer installation\n\nClone the repository and install in editable mode.\n\n```\ngit clone https://github.com/ReproNim/neurodocker\ncd neurodocker\npython -m pip install --no-cache-dir --editable .[all]\n```\n\nBefore committing changes, initialize `pre-commit` with `pre-commit install`. This will format code with each commit to keep the style consistent. _Neurodocker_ uses `black` for formatting.\n","funding_links":[],"categories":["Python"],"sub_categories":[],"project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2FReproNim%2Fneurodocker","html_url":"https://awesome.ecosyste.ms/projects/github.com%2FReproNim%2Fneurodocker","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2FReproNim%2Fneurodocker/lists"}