{"id":13745451,"url":"https://github.com/SuperElastix/elastix","last_synced_at":"2025-05-09T06:30:50.638Z","repository":{"id":37359517,"uuid":"91586944","full_name":"SuperElastix/elastix","owner":"SuperElastix","description":"Official elastix repository","archived":false,"fork":false,"pushed_at":"2025-05-02T07:53:50.000Z","size":93863,"stargazers_count":520,"open_issues_count":81,"forks_count":123,"subscribers_count":23,"default_branch":"main","last_synced_at":"2025-05-02T08:45:31.646Z","etag":null,"topics":["elastix","registration","toolbox"],"latest_commit_sha":null,"homepage":"http://elastix.dev","language":"C++","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"apache-2.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/SuperElastix.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":"GOVERNANCE.md","roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2017-05-17T14:41:22.000Z","updated_at":"2025-04-30T14:32:26.000Z","dependencies_parsed_at":"2023-10-20T23:17:35.099Z","dependency_job_id":"2edae125-42ff-4f37-80f7-34d0ce7d41e6","html_url":"https://github.com/SuperElastix/elastix","commit_stats":{"total_commits":3416,"total_committers":37,"mean_commits":92.32432432432432,"dds":0.6238290398126464,"last_synced_commit":"b8c13f5a30b5ae9ecceebce0ce237b261a70276b"},"previous_names":[],"tags_count":102,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/SuperElastix%2Felastix","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/SuperElastix%2Felastix/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/SuperElastix%2Felastix/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/SuperElastix%2Felastix/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/SuperElastix","download_url":"https://codeload.github.com/SuperElastix/elastix/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":253205859,"owners_count":21871158,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["elastix","registration","toolbox"],"created_at":"2024-08-03T06:00:18.803Z","updated_at":"2025-05-09T06:30:45.625Z","avatar_url":"https://github.com/SuperElastix.png","language":"C++","funding_links":[],"categories":["Software","Registration"],"sub_categories":["Registration Related/Based Application"],"readme":"\u003ca href=\"https://elastix.dev/\"\u003e\n  \u003cimg src=\"https://github.com/SuperElastix/elastix/blob/main/dox/art/elastix_logo_full_small.bmp\" alt=\"elastix logo\" title=\"elastix\" align=\"right\" height=\"80\" /\u003e\n\u003c/a\u003e\n\n# elastix image registration toolbox #\n\n[![License](https://img.shields.io/badge/License-Apache%202.0-blue.svg)](https://github.com/SuperElastix/elastix/raw/main/LICENSE)\n[![PyPI Version](https://img.shields.io/pypi/v/itk-elastix.svg)](https://pypi.python.org/pypi/itk-elastix)\n[![GitHub Actions](https://github.com/SuperElastix/elastix/workflows/Elastix/badge.svg)](https://github.com/SuperElastix/elastix/actions)\n[![Model Zoo](https://img.shields.io/badge/open-Model%20Zoo-blue.svg)](https://elastix.dev/modelzoo/)\n[![Docker](https://img.shields.io/badge/open-docker%20image-blueviolet.svg)](https://hub.docker.com/repository/docker/superelastix/elastix)\n[![DOI](https://zenodo.org/badge/91586944.svg)](https://zenodo.org/doi/10.5281/zenodo.13366181)\n\nWelcome to elastix: a toolbox for rigid and nonrigid registration of images.\n\nelastix is open source software, based on the well-known [Insight Segmentation and Registration Toolkit (ITK)](https://itk.org/). The software consists of a collection of algorithms that are commonly used to perform (medical) image registration: the task of finding a spatial transformation, mapping one image (the _fixed_ image) to another (the _moving_ image), by optimizing relevant image similarity metrics. The modular design of elastix allows the user to quickly configure, test, and compare different registration methods for a specific application. A command-line interface enables automated processing of large numbers of data sets, by means of scripting.\nNowadays elastix is accompanied by [ITKElastix](https://github.com/InsightSoftwareConsortium/ITKElastix) making it available in Python ([on Pypi](https://pypi.org/project/itk-elastix/)) and by [SimpleElastix](http://simpleelastix.github.io/), making it available in languages like C++, Python, Java, R, Ruby, C# and Lua. A docker image of the latest elastix build is available as well on [dockerhub](https://hub.docker.com/repository/docker/superelastix/elastix). Several plugins exist for those who wish to use the functionality of elastix in a graphical user interface, among others a [napari](https://github.com/SuperElastix/elastix_napari) and a [3Dslicer](https://github.com/lassoan/SlicerElastix) plugin.\n\n## Authors ##\n\nThe lead developers of elastix are [Stefan Klein](https://github.com/stefanklein) and [Marius Staring](https://github.com/mstaring). This software was initially developed at the [Image Sciences Institute](http://www.isi.uu.nl), under supervision of [Josien P.W. Pluim](http://www.isi.uu.nl/People/Josien/). Today, [many](https://github.com/SuperElastix/elastix/graphs/contributors) have contributed to elastix.\n\nIf you use this software anywhere we would appreciate if you cite the following articles:\n- S. Klein, M. Staring, K. Murphy, M.A. Viergever, J.P.W. Pluim, \"elastix: a toolbox for intensity based medical image registration,\" IEEE Transactions on Medical Imaging, vol. 29, no. 1, pp. 196 - 205, January 2010. [download](https://elastix.dev/marius/publications/2010_j_TMI.php) [doi](http://dx.doi.org/10.1109/TMI.2009.2035616)\n- D.P. Shamonin, E.E. Bron, B.P.F. Lelieveldt, M. Smits, S. Klein and M. Staring, \"Fast Parallel Image Registration on CPU and GPU for Diagnostic Classification of Alzheimer’s Disease\", Frontiers in Neuroinformatics, vol. 7, no. 50, pp. 1-15, January 2014. [download](https://elastix.dev/marius/publications/2014_j_FNI.php) [doi](http://dx.doi.org/10.3389/fninf.2013.00050)\n\nSpecific components of elastix are made by many; The relevant citation can be found [here](https://github.com/SuperElastix/elastix/wiki/How-to-cite-elastix-(components)).\nIn addition, you can use the elastix DOI identifiers from Zenodo to refer to specific software releases: https://zenodo.org/doi/10.5281/zenodo.13366181\n\n## More information ##\n\nMore information, including an extensive manual and model zoo, can be found on the [wiki](https://github.com/SuperElastix/elastix/wiki)\n\nInteractive tutorials are available in [Jupyter notebooks](https://mybinder.org/v2/gh/InsightSoftwareConsortium/ITKElastix/main?urlpath=lab/tree/examples%2FITK_Example01_SimpleRegistration.ipynb).\n\nYou can also subscribe to the [mailing list](https://groups.google.com/forum/#!forum/elastix-imageregistration) for questions. Information on contributing to `elastix` can be found [here](CONTRIBUTING.md).\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2FSuperElastix%2Felastix","html_url":"https://awesome.ecosyste.ms/projects/github.com%2FSuperElastix%2Felastix","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2FSuperElastix%2Felastix/lists"}