{"id":21845857,"url":"https://github.com/abhijeetsingh1704/fasta2q","last_synced_at":"2025-10-19T22:11:59.059Z","repository":{"id":68618850,"uuid":"217908038","full_name":"abhijeetsingh1704/fastA2Q","owner":"abhijeetsingh1704","description":"simple and convenient program to convert fasta sequences to fastq sequences","archived":false,"fork":false,"pushed_at":"2020-05-13T12:14:30.000Z","size":43,"stargazers_count":1,"open_issues_count":0,"forks_count":1,"subscribers_count":1,"default_branch":"master","last_synced_at":"2025-03-21T16:58:36.572Z","etag":null,"topics":["conversion","fasta","fasta-format","fasta-sequences","fastq","fastq-files","fastq-format","fq","sequence"],"latest_commit_sha":null,"homepage":"","language":"Shell","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"lgpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/abhijeetsingh1704.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null}},"created_at":"2019-10-27T19:51:07.000Z","updated_at":"2023-01-03T06:11:22.000Z","dependencies_parsed_at":null,"dependency_job_id":"a9c0d1d7-1642-4f20-b3e0-e29f1dd6324a","html_url":"https://github.com/abhijeetsingh1704/fastA2Q","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/abhijeetsingh1704/fastA2Q","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/abhijeetsingh1704%2FfastA2Q","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/abhijeetsingh1704%2FfastA2Q/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/abhijeetsingh1704%2FfastA2Q/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/abhijeetsingh1704%2FfastA2Q/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/abhijeetsingh1704","download_url":"https://codeload.github.com/abhijeetsingh1704/fastA2Q/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/abhijeetsingh1704%2FfastA2Q/sbom","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":263897889,"owners_count":23526827,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["conversion","fasta","fasta-format","fasta-sequences","fastq","fastq-files","fastq-format","fq","sequence"],"created_at":"2024-11-27T23:11:40.644Z","updated_at":"2025-10-19T22:11:58.963Z","avatar_url":"https://github.com/abhijeetsingh1704.png","language":"Shell","funding_links":[],"categories":[],"sub_categories":[],"readme":"# fastA2Q\n\n* A simple and convenient program to convert fasta sequences to fastq sequences, in casava 1.8 header format version. \n* The fastq sequence Phred quality scores will be ≥ 20 and distributed throughout the fastq sequence length, reference - https://support.illumina.com/help/BaseSpace_OLH_009008/Content/Source/Informatics/BS/QualityScoreEncoding_swBS.htm\n\n### An example of fastq header output with fastA2Q\n\n##### @LSM:213:VGKE2RP:2:1971:12668:04830 2:N:66:CGGACGTA+GTTCACGT\n\n```\nwhere\n@         - fastq header initial\nLSM       - unique instrument name\n213       - run id\nVGKE2RP   - flowcell id\n2         - flowcell lane\n1971      - tile number within the flowcell lane\n12668     - 'x'-coordinate of the cluster within the tile\n04830     - 'y'-coordinate of the cluster within the tile\n2         - member of a pair, 1 or 2 (paired-end or mate-pair reads only)\nN         - Y if the read is filtered, N otherwise\n66        - 0 when none of the control bits are on, otherwise it is an even number\nCGGACGTA  - index 1 sequence\n+         - connection between indexes\nGTTCACGT  - index 2 sequence\n```\n\n## Usage\n\n#### Add execution permision\n\n```\nchmod +x fastA2Q\n```\n#### Running the program\n```\nfastA2Q -i /path/input_file.fasta -o /path/output_file.fastq\n```\n\n##### License\n\nfastA2Q is licensed under the GNU Lesser General Public License v3.0\nPermissions of this copyleft license are conditioned on making available complete source code of licensed works and modifications under the same license or the GNU GPLv3. Copyright and license notices must be preserved. Contributors provide an express grant of patent rights. However, a larger work using the licensed work through interfaces provided by the licensed work may be distributed under different terms and without source code for the larger work.\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fabhijeetsingh1704%2Ffasta2q","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fabhijeetsingh1704%2Ffasta2q","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fabhijeetsingh1704%2Ffasta2q/lists"}