{"id":32111157,"url":"https://github.com/abodein/netomics","last_synced_at":"2026-02-21T06:13:46.097Z","repository":{"id":41380337,"uuid":"357661529","full_name":"abodein/netOmics","owner":"abodein","description":"Multi-omics multi-layered network integration and 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Status](https://travis-ci.com/abodein/netOmics.svg?branch=master)]\n(https://travis-ci.com/abodein/netOmics)\n\n[![License: GPL v3](https://img.shields.io/badge/License-GPLv3-blue.svg)]\n(https://www.gnu.org/licenses/gpl-3.0)\n\n# netOmics\n\nWith netOmics, we go beyond integration by introducing an interpretation tool.\nnetOmics is a package for the creation and exploration of multi-omics networks.\n\nDepending on the provided dataset, it allows to create inference networks from \nexpression data but also interaction networks from knowledge databases.\nAfter merging the sub-networks to obtain a global multi-omics network, \nwe propose network exploration methods using propoagation techniques to perform \nfunctional prediction or identification of molecular mechanisms.\n\nFurthermore, the package has been developed for longitudinal multi-omics data \nand can be used in conjunction with our previously published package timeOmics.\n\nfor more examples, please visite \nhttps://github.com/abodein/netOmics-case-studies\n\n## Installation\n\n### Latest `BioConductor` Release\n\nTo install this package, start R (version \"4.1\") and enter: \n\n```r\nif (!requireNamespace(\"BiocManager\", quietly = TRUE))\n    install.packages(\"BiocManager\")\n\nBiocManager::install(\"netOmics\")\n```\n\n\n### Latest `GitHub` Version\n\nInstall the devtools package in R, then load it and install the latest stable \nversion of `netOmics` from `GitHub`\n\n```r\n## install devtools if not installed\nif (!requireNamespace(\"devtools\", quietly = TRUE))\n    install.packages(\"devtools\")\n## install netOmics\ndevtools::install_github(\"abodein/netOmics\")\n```\n\n## Citing\n\n*\"Bodein, A., Scott-Boyer, M. P., Perin, O., Le Cao, K. A., \u0026 Droit, A. (2020). \nInterpretation of network-based integration from multi-omics longitudinal data. \nbioRxiv.\"*\n\n## Maintainer\nAntoine Bodein (\u003cantoine.bodein.1@ulaval.ca\u003e)\n\n## Bugs/Feature requests\n\nIf you have any bugs or feature requests, \n[let us know](https://github.com/abodein/netOmics/issues). \nThanks!\n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fabodein%2Fnetomics","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fabodein%2Fnetomics","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fabodein%2Fnetomics/lists"}