{"id":18634586,"url":"https://github.com/abrg-models/ermentrout2009","last_synced_at":"2025-11-04T11:30:30.604Z","repository":{"id":77802471,"uuid":"137955668","full_name":"ABRG-Models/Ermentrout2009","owner":"ABRG-Models","description":"An implementation of reaction-diffusion whisker barrel patterns after Ermentrout et al 2009 (PLOS Comp Biol)","archived":false,"fork":false,"pushed_at":"2018-07-22T14:34:04.000Z","size":13,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":5,"default_branch":"master","last_synced_at":"2024-12-27T08:27:07.403Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"C++","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/ABRG-Models.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2018-06-19T23:21:42.000Z","updated_at":"2018-07-22T14:34:05.000Z","dependencies_parsed_at":null,"dependency_job_id":"37721cb8-afb3-4c9f-998e-cd2220b9295b","html_url":"https://github.com/ABRG-Models/Ermentrout2009","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ABRG-Models%2FErmentrout2009","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ABRG-Models%2FErmentrout2009/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ABRG-Models%2FErmentrout2009/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ABRG-Models%2FErmentrout2009/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/ABRG-Models","download_url":"https://codeload.github.com/ABRG-Models/Ermentrout2009/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":239432873,"owners_count":19637799,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-11-07T05:19:40.745Z","updated_at":"2025-11-04T11:30:30.562Z","avatar_url":"https://github.com/ABRG-Models.png","language":"C++","funding_links":[],"categories":[],"sub_categories":[],"readme":"# Ermentrout2009\nAn implementation of reaction-diffusion whisker barrel patterns after:\n\nSubbarrel Patterns in Somatosensory Cortical Barrels Can Emerge from\nLocal Dynamic Instabilities, Ermentrout et al 2009 (PLOS Comp Biol).\n\n## Build instructions\n\nFirst, git clone, compile and install libmorphologica:\n\nhttps://github.com/ABRG-Models/morphologica\n\nThis model is launched by a python script called sim.py. sim.py will\nlaunch (using code in processes.py) 1 or more instances of a compiled\nC++ program called processes. Before this will work, you need to\ncompile processes:\n\n```sh\ncd processes/sim\nmkdir build\ncd build\ncmake ..\nmake\ncd ../../../\n```\n\nNow you can run the model:\n\n```sh\npython sim.py\n```\n\nThis should launch two separate simulations showing the solution to a\nreaction-diffusion system as given in the paper (does this correspond\nto any particular figure in the paper?).\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fabrg-models%2Fermentrout2009","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fabrg-models%2Fermentrout2009","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fabrg-models%2Fermentrout2009/lists"}