{"id":20566186,"url":"https://github.com/aces/mni-models_adni_nl","last_synced_at":"2026-03-11T14:38:18.221Z","repository":{"id":139175246,"uuid":"185635501","full_name":"aces/mni-models_adni_nl","owner":"aces","description":null,"archived":false,"fork":false,"pushed_at":"2019-05-09T19:51:35.000Z","size":16813,"stargazers_count":1,"open_issues_count":1,"forks_count":1,"subscribers_count":5,"default_branch":"master","last_synced_at":"2026-02-22T13:53:01.729Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Makefile","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/aces.png","metadata":{"files":{"readme":"README","changelog":"ChangeLog","contributing":null,"funding":null,"license":"COPYING","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":"AUTHORS","dei":null,"publiccode":null,"codemeta":null}},"created_at":"2019-05-08T15:41:45.000Z","updated_at":"2025-02-27T21:30:34.000Z","dependencies_parsed_at":null,"dependency_job_id":"fc995c1c-627e-437c-9bee-600cee6fab9e","html_url":"https://github.com/aces/mni-models_adni_nl","commit_stats":null,"previous_names":[],"tags_count":4,"template":false,"template_full_name":null,"purl":"pkg:github/aces/mni-models_adni_nl","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aces%2Fmni-models_adni_nl","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aces%2Fmni-models_adni_nl/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aces%2Fmni-models_adni_nl/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aces%2Fmni-models_adni_nl/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/aces","download_url":"https://codeload.github.com/aces/mni-models_adni_nl/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aces%2Fmni-models_adni_nl/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":30384115,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-03-11T14:10:17.325Z","status":"ssl_error","status_checked_at":"2026-03-11T14:09:37.934Z","response_time":84,"last_error":"SSL_connect returned=1 errno=0 peeraddr=140.82.121.6:443 state=error: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-11-16T04:40:19.718Z","updated_at":"2026-03-11T14:38:18.197Z","avatar_url":"https://github.com/aces.png","language":"Makefile","funding_links":[],"categories":[],"sub_categories":[],"readme":"1) MNI ADNI non-linear asymmetric Average Brain Stereotaxic Registration Model\n\nThis is a version of the ADNI Average Brain - an average of ???\nT1-weighted MRI scans, linearly and non-linearly (?? iterations)\ntransformed to form an asymmetric model in Talairach space - that \nis specially adapted for use with the MNI Linear Registration \nPackage (mni_autoreg).\n\n Included in this package are the following files:\n\n     mni_adni_t1w_tal_nlin_asym.mnc:\n\ta version of the average MRI that covers the whole brain\n        (unlike the original Talairach atlas), sampled with 1mm cubic\n        voxels\n     mni_adni_t1w_tal_nlin_asym_mask.mnc, mni_adni_t1w_tal_nlin_asym_mask.obj:\n\ta mask of the average brain in mni_adni_t1w_tal_nlin_asym.mnc.mnc,\n\tsemi-automatically created by Vladimir Fonov. Note that\n\tthis mask has had holes filled in, so it is a connected volume\n\tbut includes non-brain tissue (eg. the CSF in the ventricles)\n     mni_adni_t1w_tal_nlin_asym_headmask.mnc:\n\tanother mask (full head mask), required for nonlinear mode\n     mni_adni_t1w_tal_nlin_asym_vent.mnc, mni_adni_t1w_tal_nlin_asym_vent.obj:\n        a mask of the ventricles\n     mni_adni_t1w_tal_nlin_asym_ntags_1000_bg.tag:\n        tag points for the background for mni_adni_t1w_tal_nlin_asym.mnc\n     mni_adni_t1w_tal_nlin_asym_ntags_1000_nobg.tag\n        tag points for the CSF, GM, and WM for mni_adni_t1w_tal_nlin_asym.mnc\n     Cerebellum_Ventricles_SubCortical_Mask-ADNI.mnc:\n        a template for the cerebellum, brain-stem, ventricles and sub-cortical\n        gray to be used in the CIVET pipeline\n     to_icbm152_2009a.xfm, to_icbm152_2009a_grid_0.mnc:\n        a non-linear transform to map the ADNI model to the MNI-ICBM152-2009a\n        model.\n\n2) MNI ADNI non-linear symmetric Average Brain Stereotaxic Registration Model, hi-resolution\n\nThis is a version of the ADNI Average Brain - an average of ???\nT1-weighted MRI scans, linearly and non-linearly (?? iterations)\ntransformed to form an asymmetric model in Talairach space - that \nis specially adapted for use with the MNI Linear Registration \nPackage (mni_autoreg). The voxel resolution of this model is 0.5mm \nisotropic.\n\n Included in this package are the following files:\n\n     mni_adni_hi_t1w_tal_nlin_sym.mnc:\n\ta version of the average MRI that covers the whole brain\n        (unlike the original Talairach atlas), sampled with 1mm cubic\n        voxels\n     mni_adni_hi_t1w_tal_nlin_sym_mask.mnc, mni_adni_t1w_tal_nlin_asym_mask.obj:\n\ta mask of the average brain in mni_adni_t1w_tal_nlin_asym.mnc.mnc,\n\tsemi-automatically created by Vladimir Fonov. Note that\n\tthis mask has had holes filled in, so it is a connected volume\n\tbut includes non-brain tissue (eg. the CSF in the ventricles)\n     mni_adni_hi_t1w_tal_nlin_sym_headmask.mnc:\n\tanother mask (full head mask), required for nonlinear mode\n     mni_adni_hi_t1w_tal_nlin_sym_vent.mnc, mni_adni_hi_t1w_tal_nlin_sym_vent.obj:\n        a mask of the ventricles\n     mni_adni_hi_t1w_tal_nlin_sym_ntags_1000_bg.tag:\n        tag points for the background for mni_adni_t1w_tal_nlin_asym.mnc\n     mni_adni_hi_t1w_tal_nlin_sym_ntags_1000_nobg.tag:\n        tag points for the CSF, GM, and WM for mni_adni_t1w_tal_nlin_asym.mnc\n     gipt_adnihisym.mnc:\n        a mask for sub-cortical gray that is used to define the sub-cortical\n        tissue class in PVE\n     Cerebellum_Ventricles_SubCortical_Mask-ADNIhi.mnc:\n        a template for the cerebellum, brain-stem, ventricles, sub-cortical\n        gray, hippocampus, amygdala, to be used in the CIVET pipeline\n     hi_to_icbm152_2009b.xfm, hi_to_icbm152_2009b_grid_0.mnc:\n        a non-linear transform to map the hi-res ADNI sym model to the MNI-ICBM152-2009b\n        model (warning: it's not very accurate).\n\n3) References:\n\n  Fonov, V., Coupe, P., Eskildsen, S., Collins, L., and The Alzheimers’s Disease Neuroimaging Initiative (2011). \n  Atrophy specific MRI brain template for Alzheimer’s disease and Mild Cognitive Impairment. \n  Alzheimer’s Association International Conference, July 2011, France. 7 (4), pp. S58, 2011. \n  https://hal.archives-ouvertes.fr/hal-00645521 \n  https://drive.google.com/file/d/0B2WB9sZf0qcZTzUxZDU1QWRJRVE/view\n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Faces%2Fmni-models_adni_nl","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Faces%2Fmni-models_adni_nl","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Faces%2Fmni-models_adni_nl/lists"}