{"id":47755319,"url":"https://github.com/alec-glisman/alec-glisman.github.io","last_synced_at":"2026-04-03T04:12:47.710Z","repository":{"id":179793446,"uuid":"484132624","full_name":"alec-glisman/alec-glisman.github.io","owner":"alec-glisman","description":"My professional website","archived":false,"fork":false,"pushed_at":"2026-03-30T01:05:08.000Z","size":64303,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":0,"default_branch":"main","last_synced_at":"2026-03-30T01:38:42.662Z","etag":null,"topics":["markdown","professional-website","yaml"],"latest_commit_sha":null,"homepage":"https://alec-glisman.github.io","language":"Python","has_issues":false,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":"academicpages/academicpages.github.io","license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/alec-glisman.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null,"notice":null,"maintainers":null,"copyright":null,"agents":null,"dco":null,"cla":null}},"created_at":"2022-04-21T16:49:18.000Z","updated_at":"2026-03-30T01:05:11.000Z","dependencies_parsed_at":null,"dependency_job_id":"f4e49e3a-9faa-4dfb-92ca-1d8388d80fa1","html_url":"https://github.com/alec-glisman/alec-glisman.github.io","commit_stats":null,"previous_names":["alec-glisman/alec-glisman.github.io"],"tags_count":2,"template":false,"template_full_name":null,"purl":"pkg:github/alec-glisman/alec-glisman.github.io","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/alec-glisman%2Falec-glisman.github.io","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/alec-glisman%2Falec-glisman.github.io/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/alec-glisman%2Falec-glisman.github.io/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/alec-glisman%2Falec-glisman.github.io/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/alec-glisman","download_url":"https://codeload.github.com/alec-glisman/alec-glisman.github.io/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/alec-glisman%2Falec-glisman.github.io/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":31333231,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-04-03T03:20:36.090Z","status":"ssl_error","status_checked_at":"2026-04-03T03:20:35.133Z","response_time":107,"last_error":"SSL_connect returned=1 errno=0 peeraddr=140.82.121.6:443 state=error: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["markdown","professional-website","yaml"],"created_at":"2026-04-03T04:12:46.587Z","updated_at":"2026-04-03T04:12:47.703Z","avatar_url":"https://github.com/alec-glisman.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"# Alec Glisman's Personal Website\n\nProfessional website for Alec Glisman, Senior AI/ML Scientist at Merck \u0026 Co. Built with Jekyll on the Academic Pages template. Hosted on GitHub Pages at **[alec-glisman.github.io](https://alec-glisman.github.io)**.\n\n## Quick Start\n\n### Prerequisites\n\n- **Docker Desktop**\n\n### Run Locally\n\n```bash\n# Start development server with live reload\ndocker compose up dev\n\n# Visit http://localhost:4000\n```\n\n## Repository Structure\n\n### Site Source Files\n\n```\n├── _config.yml                  # Main Jekyll configuration\n├── _config.dev.yml              # Development overrides (expanded SCSS, no analytics)\n│\n├── _pages/                      # Core pages\n│   ├── about.md                # Profile\n│   ├── research.md             # Research overview\n│   ├── experience.md           # Work experience\n│   ├── projects.md             # Featured projects\n│   ├── skills.md               # Technical skills\n│   ├── publications.md         # Publication archive (auto-generated)\n│   ├── talks.html              # Talks collection\n│   ├── teaching.html           # Teaching collection\n│   └── 404.md\n│\n├── _publications/               # Publication collection (5 entries)\n│   ├── 2020-scriven-love-1.md\n│   ├── 2022-potential-flow-2.md\n│   ├── 2024-langmuir-adsorption-isotherm.md\n│   ├── 2024-macromolecules-polyelectrolyte.md\n│   └── 2025-langmuir-binding-modes.md\n│\n├── _teaching/                   # Teaching collection\n│   └── 2021-spring-ChE151b.md\n│\n├── _layouts/                    # Page templates\n│   ├── default.html            # Base layout\n│   ├── single.html             # Single page layout\n│   └── archive.html            # Collection archive layout\n│\n├── _includes/                   # Reusable partials\n│   ├── head/                   # Head components\n│   ├── footer.html\n│   ├── masthead.html\n│   ├── navigation.html\n│   └── scripts.html\n│\n├── _sass/                       # SCSS source files\n│   ├── _variables.scss         # Colors, fonts, spacing\n│   │                           # Navy #1B2A4A, Teal #0EA5C9, Inter font\n│   ├── _custom.scss            # Custom design system\n│   │                           # Animations, cards, buttons\n│   └── [theme partials]        # Minimal Mistakes theme\n│\n├── _data/                       # YAML data files\n│   ├── navigation.yml          # Main navigation menu\n│   ├── authors.yml             # Author profile\n│   └── ui-text.yml             # Localization strings\n│\n├── assets/\n│   ├── css/main.scss           # Primary stylesheet\n│   ├── js/main.min.js          # Minified JS bundle\n│   └── js/_main.js             # Custom JS (scroll-reveal)\n│\n├── images/                      # Site images\n│   ├── profile.png\n│   └── [publication figures]\n│\n├── files/                       # Downloadable PDFs\n│   └── [publication PDFs]\n│\n├── tests/                       # Comprehensive test suite (18 tests, 5 categories)\n│   ├── conftest.py            # Pytest fixtures\n│   ├── requirements.txt        # Python dependencies\n│   ├── Makefile               # Test commands\n│   ├── unit/                  # Source validation\n│   ├── integration/           # HTML parsing\n│   ├── acceptance/            # HTTP \u0026 accessibility\n│   ├── regression/            # Change detection\n│   └── e2e/                   # Browser automation\n│\n├── Gemfile                      # Ruby dependencies\n├── .ruby-version               # Ruby version (3.1)\n├── package.json                # Node.js (minimal)\n├── Dockerfile                   # Multi-stage Docker build (dev/build/test)\n├── docker-compose.yml           # Docker Compose services\n│\n└── CLAUDE.md                    # Project guidance\n```\n\n### Design System\n\n- **Primary Color**: Navy (#1B2A4A)\n- **Accent Color**: Teal (#0EA5C9)\n- **Font**: Inter (Google Fonts)\n- **Base Theme**: Minimal Mistakes (forked as Academic Pages)\n\n## Development\n\n### Build \u0026 Commands\n\n```bash\ndocker compose up dev                        # Dev server → http://localhost:4000\ndocker compose run test                      # Full test suite\ndocker compose run test make test-unit       # Fast unit tests only\n```\n\n**Development config:** Use `_config.dev.yml` for local overrides (expanded SCSS, no analytics)\n\n### File Editing\n\n- **Content**: Edit `.md` or `.html` files in `_pages/`, `_publications/`, etc.\n- **Styling**: Modify `_sass/` files (imported in `assets/css/main.scss`)\n- **Navigation**: Edit `_data/navigation.yml`\n- **Author Info**: Edit `_data/authors.yml`\n- **Layout**: Modify `_layouts/` and `_includes/` templates\n\nChanges are reflected immediately in live reload mode.\n\n## Testing\n\nA comprehensive Python-based test suite with 18 test files across 5 categories.\n\n### Quick Reference\n\n```bash\ndocker compose run test                          # All tests\ndocker compose run test make test-unit           # ~5-10s — Source validation\ndocker compose run test make test-integration    # ~10-15s — HTML parsing\ndocker compose run test make test-regression     # ~10-15s — Change detection\ndocker compose run test make test-acceptance     # ~30-40s — HTTP \u0026 accessibility\ndocker compose run test make test-e2e            # ~60-90s — Browser automation\ndocker compose run test make clean               # Clean cache\n```\n\n### Test Categories\n\n| Category | Purpose | Duration | Files |\n|----------|---------|----------|-------|\n| **Unit** | Source file validation (Jekyll build, YAML, front matter) | ~5-10s | `unit/` |\n| **Integration** | HTML structure and content verification | ~10-15s | `integration/` |\n| **Acceptance** | HTTP server, page status, WCAG accessibility | ~30-40s | `acceptance/` |\n| **Regression** | CSS classes, colors, structure snapshots | ~10-15s | `regression/` |\n| **E2E** | Playwright browser automation, navigation, animations | ~60-90s | `e2e/` |\n\n### Test Coverage\n\n- ✅ Jekyll builds without errors\n- ✅ All 5 publications build correctly\n- ✅ YAML data files are valid\n- ✅ HTML structure is correct (lang, title, nav, footer, meta tags)\n- ✅ Internal links resolve to existing files\n- ✅ All pages return HTTP 200\n- ✅ WCAG accessibility compliance (axe-core)\n- ✅ Custom CSS classes are present\n- ✅ Design colors are applied\n- ✅ Navigation works between pages\n- ✅ Scroll-reveal animations trigger\n- ✅ Responsive design (mobile, tablet, desktop)\n\nSee [`tests/README.md`](./tests/README.md) for detailed test documentation.\n\n## Environment Setup\n\n```bash\ndocker compose up dev    # Dev server\ndocker compose run test  # Tests\n```\n\nNo Ruby or Python installation needed. See [`SETUP.md`](./SETUP.md) for details.\n\n## Deployment\n\n**Automatic:** Push to `main` branch — GitHub Pages automatically builds and deploys.\n\n**Build Process:**\n\n1. GitHub Pages runs Jekyll build\n2. Static files are generated to `_site/`\n3. Site is deployed to `https://alec-glisman.github.io`\n\nNo CI/CD pipelines required — GitHub Pages handles everything.\n\n## Configuration\n\n### Jekyll Config (`_config.yml`)\n\n- Site title, author, baseurl\n- Collections: publications, talks, teaching\n- Plugins: jekyll-paginate, jekyll-sitemap, jekyll-gist, jekyll-feed, jekyll-redirect-from\n- Markdown: kramdown with GFM\n- Syntax highlighting: Rouge\n\n### Development Config (`_config.dev.yml`)\n\nLocal overrides for development:\n\n- Expanded SCSS output (no minification)\n- Analytics disabled\n\nUse during development: `jekyll liveserve` automatically applies `_config.dev.yml`.\n\n## Content Guidelines\n\nFor creating and maintaining content, see the [Scientific Writer Guidelines](./CLAUDE.scientific-writer.md) for best practices on:\n\n- Tone and style\n- Formatting and structure\n- Proper citations\n- Consistency across the site\n\n## Troubleshooting\n\n**Port 4000 already in use**\n\n```bash\nlsof -i :4000 \u0026\u0026 kill -9 \u003cPID\u003e\n```\n\n**Gems stale after Gemfile change**\n\n```bash\ndocker compose down -v \u0026\u0026 docker compose build\n```\n\n## Development Workflow\n\n```bash\n# 1. Start development server\ndocker compose up dev\n\n# 2. Edit content in _pages/, _publications/, etc.\n\n# 3. Run tests before committing\ndocker compose run test make test-unit    # Fast\ndocker compose run test                   # Full suite\n\n# 4. Commit and push to main\ngit add .\ngit commit -m \"Your message\"\ngit push origin main\n```\n\n## Performance\n\n| Task | Duration |\n|------|----------|\n| Unit tests only | ~5-10s |\n| Full test suite | ~2-3 min |\n| Jekyll build | ~5-10s |\n| Jekyll live reload | ~1-2s per change |\n\n## Resources\n\n- [Jekyll Documentation](https://jekyllrb.com/)\n- [Academic Pages Theme](https://github.com/academicpages/academicpages.github.io)\n- [Minimal Mistakes Theme](https://mmistakes.github.io/minimal-mistakes/)\n- [pytest Documentation](https://docs.pytest.org/)\n- [Playwright Python Docs](https://playwright.dev/python/)\n\n## License\n\n[Specify your license here if applicable]\n\n## Contact\n\n**Website:** \u003chttps://alec-glisman.github.io\u003e\n**LinkedIn:** \u003chttps://www.linkedin.com/in/alec-glisman\u003e\n\n---\n\n**Last Updated:** March 2026\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Falec-glisman%2Falec-glisman.github.io","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Falec-glisman%2Falec-glisman.github.io","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Falec-glisman%2Falec-glisman.github.io/lists"}