{"id":19091989,"url":"https://github.com/allencellmodeling/example_step_workflow","last_synced_at":"2025-02-22T07:27:42.286Z","repository":{"id":56150602,"uuid":"240757873","full_name":"AllenCellModeling/example_step_workflow","owner":"AllenCellModeling","description":"An example step workflow that does a whole bunch of simple random matrix inversion.","archived":false,"fork":false,"pushed_at":"2020-11-24T03:44:34.000Z","size":71,"stargazers_count":0,"open_issues_count":1,"forks_count":0,"subscribers_count":5,"default_branch":"master","last_synced_at":"2025-01-02T23:14:21.681Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/AllenCellModeling.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2020-02-15T17:27:33.000Z","updated_at":"2020-11-24T03:44:33.000Z","dependencies_parsed_at":"2022-08-15T13:40:27.431Z","dependency_job_id":null,"html_url":"https://github.com/AllenCellModeling/example_step_workflow","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/AllenCellModeling%2Fexample_step_workflow","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/AllenCellModeling%2Fexample_step_workflow/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/AllenCellModeling%2Fexample_step_workflow/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/AllenCellModeling%2Fexample_step_workflow/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/AllenCellModeling","download_url":"https://codeload.github.com/AllenCellModeling/example_step_workflow/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":240139510,"owners_count":19754126,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-11-09T03:17:44.418Z","updated_at":"2025-02-22T07:27:42.266Z","avatar_url":"https://github.com/AllenCellModeling.png","language":"Python","readme":"# Example Step Workflow\n\n[![Build Status](https://github.com/AllenCellModeling/example_step_workflow/workflows/Build%20Master/badge.svg)](https://github.com/AllenCellModeling/example_step_workflow/actions)\n[![Code Coverage](https://codecov.io/gh/AllenCellModeling/example_step_workflow/branch/master/graph/badge.svg)](https://codecov.io/gh/AllenCellModeling/example_step_workflow)\n\nAn example step workflow that does a whole bunch of simple random matrix inversion.\n\n---\n\n## Workflow\nThis example step workflow generates random matrices, inverts them, does a cumulative sum over an axis,\nthe finally plots them.\n\n![DAG](docs/resources/workflow.png)\n\nBy default the workflow and all sub tasks are configured to run in a single process. However, there are example\nsteps called `mapped_raw` and `mapped_invert` to give an idea of how to switch from single threaded / process\nto parallel data gathering and processing.\n\n## Distributed\nIf you want to run this in a distributed fashion be sure install the distributed dependencies\n(`pip install -e .[distributed]`) and additionally create a `workflow_config.json` file with the following contents:\n```json\n{\n    \"project_local_staging_dir\": \"/allen/aics/modeling/{your_name}/results/example_step_workflow/\"\n}\n```\n\n_**Note:** The path your provide in the JSON file can point to wherever you want, the path simply must be available to\nall the workers._\n\n## Installation\n`pip install git+https://github.com/AllenCellModeling/example_step_workflow.git`\n\n## Development\nSee [CONTRIBUTING.md](CONTRIBUTING.md) for information related to developing the code.\n\n### Developer installation\n`pip install -e .[dev]`\n\n\n***Free software: Allen Institute Software License***\n","funding_links":[],"categories":[],"sub_categories":[],"project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fallencellmodeling%2Fexample_step_workflow","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fallencellmodeling%2Fexample_step_workflow","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fallencellmodeling%2Fexample_step_workflow/lists"}