{"id":19091927,"url":"https://github.com/allencellmodeling/geneselection","last_synced_at":"2025-07-30T21:36:28.364Z","repository":{"id":91697818,"uuid":"159737889","full_name":"AllenCellModeling/geneselection","owner":"AllenCellModeling","description":"only the best genes","archived":false,"fork":false,"pushed_at":"2020-06-16T22:58:47.000Z","size":11012,"stargazers_count":0,"open_issues_count":9,"forks_count":2,"subscribers_count":4,"default_branch":"master","last_synced_at":"2025-01-02T23:14:19.840Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/AllenCellModeling.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null}},"created_at":"2018-11-29T22:55:06.000Z","updated_at":"2019-02-18T23:23:54.000Z","dependencies_parsed_at":"2023-10-20T16:42:50.914Z","dependency_job_id":null,"html_url":"https://github.com/AllenCellModeling/geneselection","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/AllenCellModeling%2Fgeneselection","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/AllenCellModeling%2Fgeneselection/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/AllenCellModeling%2Fgeneselection/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/AllenCellModeling%2Fgeneselection/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/AllenCellModeling","download_url":"https://codeload.github.com/AllenCellModeling/geneselection/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":240139446,"owners_count":19754113,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-11-09T03:17:34.681Z","updated_at":"2025-02-22T07:27:37.748Z","avatar_url":"https://github.com/AllenCellModeling.png","language":"Python","readme":"# Geneselection\n[![Build Status](https://www.travis-ci.com/AllenCellModeling/geneselection.svg?branch=master)](https://www.travis-ci.com/AllenCellModeling/geneselection)\n[![Documentation Status](https://readthedocs.org/projects/geneselection/badge/?version=latest)](https://geneselection.readthedocs.io/en/latest/?badge=latest)\n[![codecov](https://codecov.io/gh/AllenCellModeling/geneselection/branch/master/graph/badge.svg)](https://codecov.io/gh/donovanr/plasticnet)\n\n## Installation\n\nWe use [Conda](https://conda.io/) to manage the development environment, with dependencies listed in [.environment.yml](../master/.environment.yml).\nIf you don't have `conda` installed and set up for Python 3.x, install it using the instructions on their site, and then install this package with\n\n```\ngit clone git@github.com:AllenCellModeling/geneselection.git\ncd geneselection\nconda env create -f .environment.yml\nconda activate gsel\nconda develop .\npre-commit install\n```\n\n## Development\nWe use:\n- [GitHub](https://github.com) for code hosting and issue tracking\n- [Travis CI](https://travis-ci.org/) for testing\n- [Read the Docs](https://readthedocs.org/) for auto-generating and publishing the documentation\n- [pre-commit hooks](https://git-scm.com/book/en/v2/Customizing-Git-Git-Hooks) for formatting and linting\n\n### Travis\nThe Travis configuration is in [.travis.yml](../master/.travis.yml), and doesn't have anything fancy set up.\n\nTests are run automatically when commits are pushed to GitHub. To run the tests locally, issue `pytest` in the main project directory.\n\n### Read the Docs\nDocumentation config for [Sphinx](http://www.sphinx-doc.org/) + [autodoc](http://www.sphinx-doc.org/en/master/usage/quickstart.html#autodoc) lives in [docs/source/conf.py](../master/docs/source/conf.py).\nTo get things to build with Read the Docs, you need to set up a virtual environment in the admin options there so that dependencies like `numpy` can be installed, and point Read the Docs to the `docs/source/rtd-requirements.txt` file.\nYou should also choose the `CPython 3.x` interpreter.\n\nDocs are generated automatically when commits are pushed to GitHub.\nTo generate the docs locally, from the main project directory, use\n\n```\nsphinx-build -b html docs/source docs/build\n```\n\nYou may have to create `docs/build` if it doesn't exist yet.\n\n### Pre-Commit Hooks\nPre-commit hooks are configured in [.pre-commit-config.yaml](../master/.pre-commit-config.yaml).\n\nThe pre-commit hooks we use are:\n- [Black](https://black.readthedocs.io/en/stable/) for formatting, with the default settings\n- [Flake8](http://flake8.pycqa.org/en/latest/) for linting, with configurations in [.flake8](../master/.flake8)\n","funding_links":[],"categories":[],"sub_categories":[],"project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fallencellmodeling%2Fgeneselection","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fallencellmodeling%2Fgeneselection","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fallencellmodeling%2Fgeneselection/lists"}