{"id":19091986,"url":"https://github.com/allencellmodeling/jupyter_notebook_conda_server","last_synced_at":"2026-06-26T09:31:06.744Z","repository":{"id":91697813,"uuid":"223227446","full_name":"AllenCellModeling/jupyter_notebook_conda_server","owner":"AllenCellModeling","description":"Scripts to set up a Jupiter notebook server that allows you to access your other Conda environments as Jupyter notebook kernels","archived":false,"fork":false,"pushed_at":"2020-04-30T15:48:01.000Z","size":180,"stargazers_count":0,"open_issues_count":0,"forks_count":1,"subscribers_count":4,"default_branch":"master","last_synced_at":"2025-02-22T07:31:43.073Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/AllenCellModeling.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2019-11-21T17:24:44.000Z","updated_at":"2020-04-30T15:48:04.000Z","dependencies_parsed_at":"2023-03-05T04:30:53.172Z","dependency_job_id":null,"html_url":"https://github.com/AllenCellModeling/jupyter_notebook_conda_server","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/AllenCellModeling/jupyter_notebook_conda_server","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/AllenCellModeling%2Fjupyter_notebook_conda_server","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/AllenCellModeling%2Fjupyter_notebook_conda_server/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/AllenCellModeling%2Fjupyter_notebook_conda_server/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/AllenCellModeling%2Fjupyter_notebook_conda_server/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/AllenCellModeling","download_url":"https://codeload.github.com/AllenCellModeling/jupyter_notebook_conda_server/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/AllenCellModeling%2Fjupyter_notebook_conda_server/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":34811914,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-05-26T15:22:16.424Z","status":"online","status_checked_at":"2026-06-26T02:00:06.560Z","response_time":106,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-11-09T03:17:44.294Z","updated_at":"2026-06-26T09:31:06.725Z","avatar_url":"https://github.com/AllenCellModeling.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"# jupyter notebook conda server\nSets up a Jupiter notebook server that allows you to access your other Conda environments as Jupyter notebook kernels\n\n## Installation\n```\ngit clone git@github.com:AllenCellModeling/jupyter_notebook_conda_server.git\ncd jupyter_notebook_server\nconda env create -f environment.yml\n```\nNote: The other Conda environments should have the `ipykernel` Conda package installed.\n\n## Running the Jupter notebook server\n\n```\ncd ./jupyter_notebook_server\nconda activate jupyter_notebook_conda_server\njupyter lab --notebook-dir='/allen/aics/modeling/'$USER\n```\n\n(Additional configurations can be set in `jupyter_notebook_config.py`)\n\nOn the top menu bar, you should be able to see other conda envs by going to \n`Kernel \u003e Change Kernel...`\n\nand you will get a pop-up that looks like this (for example):  \n![alt text](./kernel_examples.png \"Examples of kernels to select from\")\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fallencellmodeling%2Fjupyter_notebook_conda_server","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fallencellmodeling%2Fjupyter_notebook_conda_server","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fallencellmodeling%2Fjupyter_notebook_conda_server/lists"}