{"id":19091941,"url":"https://github.com/allencellmodeling/lightgbm_mito","last_synced_at":"2025-02-22T07:27:38.789Z","repository":{"id":91697822,"uuid":"110159721","full_name":"AllenCellModeling/lightgbm_mito","owner":"AllenCellModeling","description":"mitotic classification using features data and gradient boosted decision trees","archived":false,"fork":false,"pushed_at":"2017-11-14T23:57:06.000Z","size":2881,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":2,"default_branch":"master","last_synced_at":"2025-01-02T23:14:20.129Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Jupyter Notebook","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/AllenCellModeling.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2017-11-09T19:54:11.000Z","updated_at":"2017-11-09T20:16:13.000Z","dependencies_parsed_at":"2023-10-26T23:00:17.543Z","dependency_job_id":null,"html_url":"https://github.com/AllenCellModeling/lightgbm_mito","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/AllenCellModeling%2Flightgbm_mito","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/AllenCellModeling%2Flightgbm_mito/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/AllenCellModeling%2Flightgbm_mito/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/AllenCellModeling%2Flightgbm_mito/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/AllenCellModeling","download_url":"https://codeload.github.com/AllenCellModeling/lightgbm_mito/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":240139489,"owners_count":19754123,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-11-09T03:17:36.503Z","updated_at":"2025-02-22T07:27:38.782Z","avatar_url":"https://github.com/AllenCellModeling.png","language":"Jupyter Notebook","readme":"# Mitotic classification using gradient boosted decision trees\n\nThis repository contains a notebook `lightgbm_mito.ipynb` and some scaffolding to facilitate reproducibility.\n\nMost importantly, the `Dockerfile` creates an environment in which the notebook can be run.\nYou can either build the docker image yourself with\n\n```bash build.sh```\n\nor pull it from docker hub with\n\n```docker pull rorydm/mito_gbdts```\n\nTo run the notebook (you might want to do this in a screen session):\n\n```bash run.sh \u003cport number\u003e```\n\nthen copy the link jupyter gives you to your browser, replacing the default port `8888` with `\u003cport number\u003e`.\nIf you're working remotely, you''l have to forward the remote `\u003cport number\u003e` to your local machine.\n\nOnce the docker process is running, open the notebook, and `Kernel \u003e Restart \u0026 Run All` should work.\n","funding_links":[],"categories":[],"sub_categories":[],"project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fallencellmodeling%2Flightgbm_mito","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fallencellmodeling%2Flightgbm_mito","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fallencellmodeling%2Flightgbm_mito/lists"}