{"id":22631924,"url":"https://github.com/alleninstitute/abc_atlas_access","last_synced_at":"2025-04-07T11:05:02.828Z","repository":{"id":177173862,"uuid":"647935915","full_name":"AllenInstitute/abc_atlas_access","owner":"AllenInstitute","description":"Documentation and examples demonstrating how to access data from the Allen Brain Cell Atlas","archived":false,"fork":false,"pushed_at":"2025-03-20T23:49:17.000Z","size":536187,"stargazers_count":61,"open_issues_count":21,"forks_count":24,"subscribers_count":12,"default_branch":"main","last_synced_at":"2025-03-31T09:07:10.391Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"https://alleninstitute.github.io/abc_atlas_access/","language":"Jupyter Notebook","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/AllenInstitute.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2023-05-31T21:05:45.000Z","updated_at":"2025-03-30T07:06:38.000Z","dependencies_parsed_at":"2023-11-12T00:19:50.733Z","dependency_job_id":"107dd370-0b7d-448f-a93b-42306557bdcd","html_url":"https://github.com/AllenInstitute/abc_atlas_access","commit_stats":null,"previous_names":["alleninstitute/abc_atlas_access"],"tags_count":9,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/AllenInstitute%2Fabc_atlas_access","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/AllenInstitute%2Fabc_atlas_access/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/AllenInstitute%2Fabc_atlas_access/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/AllenInstitute%2Fabc_atlas_access/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/AllenInstitute","download_url":"https://codeload.github.com/AllenInstitute/abc_atlas_access/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":247640462,"owners_count":20971557,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-12-09T02:14:14.233Z","updated_at":"2025-04-07T11:05:02.803Z","avatar_url":"https://github.com/AllenInstitute.png","language":"Jupyter Notebook","funding_links":[],"categories":[],"sub_categories":[],"readme":"# Allen Brain Cell Atlas - Data Access\n\nThe Allen Brain Cell Atlas (ABC Atlas) aims to empower researchers worldwide to\nexplore and analyze multiple whole-brain datasets simultaneously. As the Allen\nInstitute and its collaborators continue to add new modalities, species, and\ninsights to the ABC Atlas, this groundbreaking platform will keep growing,\nopening up endless possibilities for groundbreaking discoveries and\nbreakthroughs in neuroscience. With the ABC Atlas, researchers everywhere can\ngain new insights into the brain’s complex workings, advancing our\nunderstanding of this amazing organ in ways we never thought possible.\n\n## ABC Atlas Data Access JupyterBook Website\nhttps://AllenInstitute.github.io/abc_atlas_access\n\n## How to contribute \n[JupyterBook Contribution Guide](docs/jupyterbook/README.md)\n\nNote: for scientific questions regarding the data this repository is accessing,\nplease use the\n[Allen Institute's community forum](https://community.brain-map.org/).\nIf you are having an issue with the code or notebooks not running properly\nplease open an issue on this Github repository. However, please see below.\n\n## Level of support\nWe are not currently supporting this code, but simply releasing it to the\ncommunity AS IS but are not able to provide any guarantees of support. The\ncommunity is welcome to submit issues, but you should not expect an active\nresponse.\n\n## Installation\n\nTo install base package with the cache object in your python environment, use\npip with the following command:\n\n```console\npip install git+https://github.com/alleninstitute/abc_atlas_access.git\n```\n\nTo install the package with all optional dependencies, specifically those needed\nto re-run the notebooks, you can use the following command:\n\n```console\npip install \"abc_atlas_access[notebooks] @ git+https://github.com/alleninstitute/abc_atlas_access.git\"\n```\n\nWe assume that you already have Jupyter installed if you are re-running the\nnotebooks. Running the [getting_started notebook](https://alleninstitute.github.io/abc_atlas_access/notebooks/getting_started.html)\nwill also help you install the package.\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Falleninstitute%2Fabc_atlas_access","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Falleninstitute%2Fabc_atlas_access","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Falleninstitute%2Fabc_atlas_access/lists"}