{"id":22631885,"url":"https://github.com/alleninstitute/asap-modules","last_synced_at":"2025-07-07T12:07:15.563Z","repository":{"id":39992287,"uuid":"101199597","full_name":"AllenInstitute/asap-modules","owner":"AllenInstitute","description":"Shared repo for EM connectomics and Array Tomography render based image processing modules ","archived":false,"fork":false,"pushed_at":"2025-03-25T01:08:36.000Z","size":118836,"stargazers_count":15,"open_issues_count":15,"forks_count":5,"subscribers_count":12,"default_branch":"master","last_synced_at":"2025-07-07T12:07:14.810Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"https://asap-modules.readthedocs.io/","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"bsd-2-clause","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/AllenInstitute.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2017-08-23T16:03:12.000Z","updated_at":"2025-05-08T07:32:33.000Z","dependencies_parsed_at":"2024-01-27T01:38:45.322Z","dependency_job_id":"d643c7c7-ca98-412b-be16-79e619391a2e","html_url":"https://github.com/AllenInstitute/asap-modules","commit_stats":null,"previous_names":[],"tags_count":64,"template":false,"template_full_name":null,"purl":"pkg:github/AllenInstitute/asap-modules","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/AllenInstitute%2Fasap-modules","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/AllenInstitute%2Fasap-modules/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/AllenInstitute%2Fasap-modules/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/AllenInstitute%2Fasap-modules/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/AllenInstitute","download_url":"https://codeload.github.com/AllenInstitute/asap-modules/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/AllenInstitute%2Fasap-modules/sbom","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":264075630,"owners_count":23553508,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-12-09T02:13:54.978Z","updated_at":"2025-07-07T12:07:15.536Z","avatar_url":"https://github.com/AllenInstitute.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"[![Docs](https://readthedocs.org/projects/asap-modules/badge/)](https://asap-modules.readthedocs.io/en/latest/)\n[![Code cov](https://codecov.io/gh/AllenInstitute/asap-modules/branch/master/graph/badge.svg?token=nCNsugRDky)](https://codecov.io/gh/AllenInstitute/asap-modules)\n\n# ASAP-modules\n\nASAP is a set of modules to perform stitching and alignment of EM and Array tomography data.\nIt is suitable for processing large-scale datasets and supports multiple computational environments.\n\n# Documentation\n\nThe complete documentation is available [here](https://asap-modules.readthedocs.io)\n\n\n# Installation\n\nPlease refer the documentation [Installation](docs/readme/installation.rst). on how to install and use ASAP modules\n\n# How to run\n\nThe order of processing is as follows; \n\n1. [Lens correction](docs/readme/lens_correction.rst)\n\n2. [Mipmap generation](docs/readme/mipmaps.rst)\n\n3. [Montaging](docs/readme/montaging.rst)\n\n4. [Global 3D alignment](docs/readme/rough_alignment.rst)\n\n# Other Modules\n\nA few other modules are included in ASAP to do the following.\n\n1. Materialization - render intermediate/final aligned volume to disk\n   for further processing\n2. Fusion - Fuse global 3D non-linear aligned chunks together to make a\n   complete volume\n3. Point match filter - A module that performs point match filtering of\n   an existing point match collection\n4. Point match optimization - Performs a parameter sweep from a given\n   set of ranges on a random sample of tilepairs to identify the optimal\n   set of parameters\n5. Registration - Register individual sections in an already aligned\n   volume (useful in cases of aligning missing/reimaged sections)\n\n# Support\n\n\nWe are planning on occasional updating this tool with no fixed schedule. \nCommunity involvement is encouraged through both issues and pull requests. \nPlease make pull requests against the dev branch, as we will test changes \nthere before merging into master.\n\n# Acknowledgments\n\nThis project is supported by the Intelligence Advanced Research Projects\nActivity (IARPA) via Department of Interior / Interior Business Center\n(DoI/IBC) contract number D16PC00004. The U.S. Government is authorized\nto reproduce and distribute reprints for Governmental purposes\nnotwithstanding any copyright annotation theron.\n\nDisclaimer: The views and conclusions contained herein are those of the\nauthors and should not be interpreted as necessarily representing the\nofficial policies or endorsements, either expressed or implied, of\nIARPA, DoI/IBC, or the U.S. Government.\n\n[![Docs](https://readthedocs.org/projects/asap-modules/badge/)](https://asap-modules.readthedocs.io)\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Falleninstitute%2Fasap-modules","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Falleninstitute%2Fasap-modules","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Falleninstitute%2Fasap-modules/lists"}