{"id":22632116,"url":"https://github.com/alleninstitute/patchseq_human_l23","last_synced_at":"2026-01-07T21:33:26.296Z","repository":{"id":40966056,"uuid":"250585053","full_name":"AllenInstitute/patchseq_human_L23","owner":"AllenInstitute","description":"Code for reproducing the analyses presented in \"Human cortical expansion involves diversification and specialization of  supragranular intratelencephalic-projecting neurons\".","archived":false,"fork":false,"pushed_at":"2023-07-06T21:54:57.000Z","size":80091,"stargazers_count":5,"open_issues_count":2,"forks_count":6,"subscribers_count":7,"default_branch":"master","last_synced_at":"2025-02-03T14:14:46.262Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"HTML","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/AllenInstitute.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2020-03-27T16:26:57.000Z","updated_at":"2023-05-11T10:12:47.000Z","dependencies_parsed_at":"2024-12-15T01:15:50.101Z","dependency_job_id":null,"html_url":"https://github.com/AllenInstitute/patchseq_human_L23","commit_stats":null,"previous_names":[],"tags_count":1,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/AllenInstitute%2Fpatchseq_human_L23","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/AllenInstitute%2Fpatchseq_human_L23/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/AllenInstitute%2Fpatchseq_human_L23/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/AllenInstitute%2Fpatchseq_human_L23/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/AllenInstitute","download_url":"https://codeload.github.com/AllenInstitute/patchseq_human_L23/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":246137311,"owners_count":20729339,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-12-09T02:16:17.497Z","updated_at":"2026-01-07T21:33:26.229Z","avatar_url":"https://github.com/AllenInstitute.png","language":"HTML","funding_links":[],"categories":[],"sub_categories":[],"readme":"# patchseq_human_L23\nCode for reproducing the analyses presented in \"Human cortical expansion involves diversification and specialization of  supragranular intratelencephalic-projecting neurons\".\n\n## Data\n\nMost of the data for this manuscript are located in the \"data\" folder above.  In addition you will need to download some larger data files from the [Allen Brain Map](https://portal.brain-map.org/atlases-and-data/rnaseq), as described in the relevant scripts.  Additional project information and links to raw data is available from the [Human PatchSeq L2/3 project](https://knowledge.brain-map.org/data/0R94W5U07IHCMVJ4TVK/summary) at the Allen Brain Map.\n\n## Scripts\n\nScripts for reproducing most of the analyses presented in this paper are available in the \"scripts\" folder above.  These include a combination of R and python scripts in various formats, which are described in the README for the scripts folder.\n\n## License\n\nThe license for this package is available on Github at: https://github.com/AllenInstitute/patchseq_human_L23/blob/master/LICENSE\n\n## Level of Support\n\nThis code will be updated only if figures change during review or if corrections need to be made.  \n\n## Contribution Agreement\n\nIf you contribute code to this repository through pull requests or other mechanisms, you are subject to the Allen Institute Contribution Agreement, which is available in full at: https://github.com/AllenInstitute/patchseq_human_L23/blob/master/CONTRIBUTION\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Falleninstitute%2Fpatchseq_human_l23","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Falleninstitute%2Fpatchseq_human_l23","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Falleninstitute%2Fpatchseq_human_l23/lists"}