{"id":22631904,"url":"https://github.com/alleninstitute/spatial_compare","last_synced_at":"2025-08-10T22:13:19.498Z","repository":{"id":266613828,"uuid":"813739692","full_name":"AllenInstitute/spatial_compare","owner":"AllenInstitute","description":"package for comparing spatial transcriptomics datasets","archived":false,"fork":false,"pushed_at":"2025-01-24T19:45:26.000Z","size":109763,"stargazers_count":6,"open_issues_count":16,"forks_count":9,"subscribers_count":4,"default_branch":"main","last_synced_at":"2025-04-11T20:08:48.560Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Jupyter Notebook","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/AllenInstitute.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE.txt","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2024-06-11T16:40:30.000Z","updated_at":"2025-03-18T15:59:27.000Z","dependencies_parsed_at":"2024-12-05T07:39:19.213Z","dependency_job_id":null,"html_url":"https://github.com/AllenInstitute/spatial_compare","commit_stats":null,"previous_names":["alleninstitute/spatial_compare"],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/AllenInstitute%2Fspatial_compare","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/AllenInstitute%2Fspatial_compare/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/AllenInstitute%2Fspatial_compare/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/AllenInstitute%2Fspatial_compare/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/AllenInstitute","download_url":"https://codeload.github.com/AllenInstitute/spatial_compare/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":248473128,"owners_count":21109628,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-12-09T02:14:08.177Z","updated_at":"2025-04-11T20:09:04.231Z","avatar_url":"https://github.com/AllenInstitute.png","language":"Jupyter Notebook","funding_links":[],"categories":[],"sub_categories":[],"readme":"\n`Spatial_Compare`\n\n_work in progress!_\n\n_this package is in development and currently unsupported_\n\n\nComparison of spatial experiments based on matched labels. \n\n\u003cimg width=\"231\" alt=\"image\" src=\"https://github.com/user-attachments/assets/262026c0-804b-412c-81e1-c869d205e114\" /\u003e\n\n_Not fancy, helpful_ \u0026#8482;.\n\nto install:\nTo install `Spatial_Compare`:\n\n1. Clone the repo and cd into the project directory\n    ```\n    git clone https://github.com/AllenInstitute/spatial_compare.git\n    cd spatial_compare\n    ```\n2. Install the required dependencies and install the project:\n    ```\n    pip install -r requirements.txt\n    pip install .\n    ```\n\nAlternatively you can install directly from github:\n\n```\n    pip install git+https://github.com/AllenInstitute/spatial_compare.git\n```\n\n\nThe example notebook walks through some comparisons across Xenium experiments on marmoset brain.\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Falleninstitute%2Fspatial_compare","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Falleninstitute%2Fspatial_compare","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Falleninstitute%2Fspatial_compare/lists"}