{"id":25943915,"url":"https://github.com/amlalejini/directed-digital-evolution","last_synced_at":"2026-02-24T18:33:04.130Z","repository":{"id":39111437,"uuid":"399244755","full_name":"amlalejini/directed-digital-evolution","owner":"amlalejini","description":"Computational model of laboratory directed evolution + experiments. 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Directed digital evolution\n\n[![supplemental](https://img.shields.io/badge/go%20to-supplemental%20material-ff69b4)](https://lalejini.com/directed-digital-evolution/)\n[![DOI](https://zenodo.org/badge/399244755.svg)](https://zenodo.org/badge/latestdoi/399244755)\n[![OSF](https://img.shields.io/badge/data%20%40%20OSF-10.17605%2FOSF.IO%2FZN63X-blue)](https://osf.io/zn63x/)\n[![DockerHub link](https://img.shields.io/badge/DockerHub-Hosted-blue)](https://hub.docker.com/r/amlalejini/directed-digital-evolution/)\n[![GitHub stars](https://img.shields.io/github/stars/amlalejini/directed-digital-evolution.svg?logo=github\u0026label=Stars\u0026logoColor=white)](https://github.com/amlalejini/directed-digital-evolution)\n\nClick the supplemental material badge (in pink) at the top of this readme to navigate to the supplemental material ebook.\n\nRepository guide:\n\n- [bib/](https://github.com/amlalejini/directed-digital-evolution/tree/main/bib) contains BibTex files with references used in the supplemental material.\n- [docs/](https://github.com/amlalejini/directed-digital-evolution/tree/main/docs) contains documentation\n- [experiments/](https://github.com/amlalejini/directed-digital-evolution/tree/main/experiments) contains the configuration files, HPC submission scripts, and analyses for all preliminary and final (published) experiments\n- [include/](https://github.com/amlalejini/directed-digital-evolution/tree/main/include) contains the C++ header files that implement the model of directed evolution\n- [tests/](https://github.com/amlalejini/directed-digital-evolution/tree/main/tests) contains tests for directed digital evolution library functions\n\n## Credits\n\nThis package was created with [Cookiecutter](https://github.com/cookiecutter/cookiecutter) and the [devosoft/cookiecutter-empirical-project](https://github.com/devosoft/cookiecutter-empirical-project) project template.\n\nThis package uses [Empirical](https://github.com/devosoft/Empirical#readme), a library of tools for scientific software development, with emphasis on also being able to build web interfaces using Emscripten.","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Famlalejini%2Fdirected-digital-evolution","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Famlalejini%2Fdirected-digital-evolution","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Famlalejini%2Fdirected-digital-evolution/lists"}