{"id":24874110,"url":"https://github.com/andersen-lab/lone_pine","last_synced_at":"2025-08-04T10:33:59.021Z","repository":{"id":41446212,"uuid":"339242769","full_name":"andersen-lab/lone_pine","owner":"andersen-lab","description":"Sequencing dashboard for San Diego County","archived":false,"fork":false,"pushed_at":"2025-06-26T21:28:59.000Z","size":216742,"stargazers_count":0,"open_issues_count":2,"forks_count":1,"subscribers_count":3,"default_branch":"master","last_synced_at":"2025-06-26T23:03:01.757Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Jupyter Notebook","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/andersen-lab.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2021-02-16T00:14:56.000Z","updated_at":"2025-06-26T21:29:02.000Z","dependencies_parsed_at":"2023-09-26T00:51:59.709Z","dependency_job_id":"5d2d2150-2223-472e-a57e-5219621bcef6","html_url":"https://github.com/andersen-lab/lone_pine","commit_stats":null,"previous_names":["andersen-lab/lone_pine"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/andersen-lab/lone_pine","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/andersen-lab%2Flone_pine","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/andersen-lab%2Flone_pine/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/andersen-lab%2Flone_pine/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/andersen-lab%2Flone_pine/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/andersen-lab","download_url":"https://codeload.github.com/andersen-lab/lone_pine/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/andersen-lab%2Flone_pine/sbom","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":268682653,"owners_count":24289677,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-08-04T02:00:09.867Z","response_time":79,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2025-02-01T06:26:08.873Z","updated_at":"2025-08-04T10:33:58.961Z","avatar_url":"https://github.com/andersen-lab.png","language":"Jupyter Notebook","funding_links":[],"categories":[],"sub_categories":[],"readme":"# SEARCH Alliance's sequencing dashboard\nThis repository contains the code for maintaining and publishing a dashboard for the sequencing efforts of the \nAndersen lab @ Scripps Research. Currently, only San Diego and Baja California focused dashboards are generated. \nYou can access the San Diego dashboard [here](http://sd-sequencing.info/) or on the \n[SEARCH website](https://searchcovid.info/sequencing-statistics/). The Baja California dashboard can similarly be \naccessed [here](http://sd-sequencing.info/bajacalifornia) and [here](https://searchcovid.info/baja-california-dashboard/).\nRaw sequencing data and lineage calls for these and other locations can be found in our \n[Genomics repository](https://github.com/andersen-lab/HCoV-19-Genomics).\n\n\n**Disclaimer**. Please note that this data is still based on work in progress and should be considered preliminary. If \nyou intend to include any of these data in publications, please let us know – otherwise please feel free to download and\nuse without restrictions. We have shared this data with the hope that people will download and use it, as well as \nscrutinize it, so we can improve our methods and analyses. Please contact us if you have any questions or comments – \nwe’ll buy beers for #ResearchParasites that spot flaws and faults in the data and come up with improvements!\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fandersen-lab%2Flone_pine","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fandersen-lab%2Flone_pine","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fandersen-lab%2Flone_pine/lists"}