{"id":15937503,"url":"https://github.com/andersy005/hpc-tools","last_synced_at":"2025-06-26T23:10:04.840Z","repository":{"id":181926884,"uuid":"148404870","full_name":"andersy005/hpc-tools","owner":"andersy005","description":null,"archived":false,"fork":false,"pushed_at":"2020-11-30T14:20:40.000Z","size":25,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":2,"default_branch":"master","last_synced_at":"2025-03-28T23:37:49.082Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/andersy005.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2018-09-12T01:46:57.000Z","updated_at":"2023-07-18T03:03:33.000Z","dependencies_parsed_at":null,"dependency_job_id":"b45abfe8-4e53-4b05-acf9-958806511f06","html_url":"https://github.com/andersy005/hpc-tools","commit_stats":{"total_commits":26,"total_committers":1,"mean_commits":26.0,"dds":0.0,"last_synced_commit":"d1863665162b3c9781aa5cbfc859a16af264f600"},"previous_names":["andersy005/hpc-tools"],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/andersy005%2Fhpc-tools","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/andersy005%2Fhpc-tools/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/andersy005%2Fhpc-tools/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/andersy005%2Fhpc-tools/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/andersy005","download_url":"https://codeload.github.com/andersy005/hpc-tools/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":247070782,"owners_count":20878581,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-10-07T05:03:16.936Z","updated_at":"2025-04-03T19:44:35.816Z","avatar_url":"https://github.com/andersy005.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"# Cheatsheet\n\n- [Cheatsheet](#cheatsheet)\n  - [1. Glade Quota: `gladequota`](#1-glade-quota-gladequota)\n  - [2. Using environment modules](#2-using-environment-modules)\n  - [3. Interacting with the job schedulers](#3-interacting-with-the-job-schedulers)\n    - [3.1 PBS on Cheyenne](#31-pbs-on-cheyenne)\n    - [3.2 Slurm on DAV](#32-slurm-on-dav)\n  - [4. Accessing Geyser, and Caldera using the Slurm scheduler](#4-accessing-geyser-and-caldera-using-the-slurm-scheduler)\n    - [4.1. Basic commands for managing jobs when using Slurm](#41-basic-commands-for-managing-jobs-when-using-slurm)\n    - [4.2. Starting interactive jobs](#42-starting-interactive-jobs)\n\n## 1. Glade Quota: `gladequota`\n\n```\nabanihi@cheyenne1: ~ $ gladequota\nCurrent GLADE space usage: abanihi\n\n  Space                                 Used       Quota    % Full      # Files\n---------------------------------- ----------- ----------- --------- -----------\n/glade/scratch/abanihi                 0.00 TB    10.00 TB    0.00 %           4\n/glade/work/abanihi                    0.64 GB  1024.00 GB    0.06 %       14098\n/glade/scratch_old/abanihi             0.00 TB    10.00 TB    0.00 %         741\n/glade/p_old/work/abanihi              0.00 GB   512.00 GB    0.00 %           1\n/glade/u/home/abanihi                  1.54 GB    50.00 GB    3.08 %       19414\n\n/glade/scratch  - 38.1% used (5712 TB used out of 15000 TB total)\n```\n\n## 2. Using environment modules\n\n- `module add/remove \u003csoftware\u003e`\n- `module avail`: show all currently-loadable modules\n- `module list` : show loaded modules\n- `module purge` : remove all loaded modules\n- `module save/restore \u003cname\u003e` : create/load a saved set of software\n- `module spider \u003csoftware\u003e` : search for a particular module\n\n## 3. Interacting with the job schedulers\n\n### 3.1 PBS on Cheyenne\n\n- `qsub \u003cscript\u003e` : submit batch job\n- `qstat \u003cjobid\u003e` : query job status\n- `qdel \u003cjobid\u003e` : delete/kill a job\n- `qinteractive -A \u003cproject\u003e` : Run an interactive job\n- `qcmd -A \u003cproject\u003e -- cmd.exe` : Run a command on a single compute node\n- `qselect -u \u003cusername\u003e | xargs qdel` : delete all my jobs at once, not one at a time\n\n### 3.2 Slurm on DAV\n\n- `sbatch \u003cscript\u003e` : Submit batch job\n- `squeue -j \u003cjobid\u003e` : query job status\n- `scancel \u003cjobid\u003e` : delete/kill a job\n- `execdev -A \u003cproject\u003e` : Run interactive job on DAV\n- `execca -A \u003cproject\u003e` :\n- `execgy -A \u003cproject\u003e` :\n- `execgpu -A \u003cproject\u003e` :\n\n## 4. Accessing Geyser, and Caldera using the Slurm scheduler\n\n### 4.1. Basic commands for managing jobs when using Slurm\n\n- `squeue -u $USER`: list your current job\n- `scontrol show job \u003cID\u003e` : examine a job in detail\n- `scancel \u003cID\u003e` : kill a job\n\n### 4.2. Starting interactive jobs\n\n- `execgy -a \u003cproject\u003e` : run on a geyser node\n- `execca -a \u003cproject\u003e` : run on a caldera node\n- `execdav -a \u003cproject\u003e` : run on the first available DAV resources (caldera, geyser), regardless of location\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fandersy005%2Fhpc-tools","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fandersy005%2Fhpc-tools","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fandersy005%2Fhpc-tools/lists"}