{"id":21591816,"url":"https://github.com/andreaguarracino/rs-spodgi","last_synced_at":"2025-03-18T10:21:43.824Z","repository":{"id":56392681,"uuid":"291352271","full_name":"AndreaGuarracino/rs-spodgi","owner":"AndreaGuarracino","description":"Line-by-line converter from GFA to RDF (turtle)","archived":false,"fork":false,"pushed_at":"2020-11-16T16:31:16.000Z","size":21,"stargazers_count":3,"open_issues_count":0,"forks_count":1,"subscribers_count":1,"default_branch":"master","last_synced_at":"2025-01-24T16:38:08.856Z","etag":null,"topics":["bioinformatics","gfa","variationgraphs"],"latest_commit_sha":null,"homepage":"","language":"Rust","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/AndreaGuarracino.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2020-08-29T21:30:52.000Z","updated_at":"2022-06-17T16:21:46.000Z","dependencies_parsed_at":"2022-08-15T17:50:49.070Z","dependency_job_id":null,"html_url":"https://github.com/AndreaGuarracino/rs-spodgi","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/AndreaGuarracino%2Frs-spodgi","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/AndreaGuarracino%2Frs-spodgi/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/AndreaGuarracino%2Frs-spodgi/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/AndreaGuarracino%2Frs-spodgi/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/AndreaGuarracino","download_url":"https://codeload.github.com/AndreaGuarracino/rs-spodgi/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":244198353,"owners_count":20414444,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["bioinformatics","gfa","variationgraphs"],"created_at":"2024-11-24T16:33:45.568Z","updated_at":"2025-03-18T10:21:43.802Z","avatar_url":"https://github.com/AndreaGuarracino.png","language":"Rust","funding_links":[],"categories":[],"sub_categories":[],"readme":"# rs-spodgi\n\nA(n incomplete) counterpart of [spodgi](https://github.com/pangenome/spodgi) implemented in Rust.\n\nThe functionality implemented is a line-by-line converter from [GFA](https://github.com/GFA-spec/GFA-spec/blob/master/GFA1.md) to [RDF (turtle)](https://www.w3.org/TR/turtle/), which avoids loading the entire input graph in memory.\n\n### How to build\n```\ngit clone --recursive https://github.com/AndreaGuarracino/rs-spodgi\ncd rs-spodgi\ncargo build --release\n./target/release/rs-spodgi -h\n```\n```\ngfa2rdf 0.1.0\nAndrea Guarracino\nGFA to RDF converter\n\nUSAGE:\n    rs-spodgi --gfa \u003cFILE\u003e\n\nFLAGS:\n    -h, --help       Prints help information\n    -V, --version    Prints version information\n\nOPTIONS:\n    -g, --gfa \u003cFILE\u003e    GFA input file to convert\n```\n\n### How to run\n\n```\n./target/release/rs-spodgi -g test/t_small.gfa \u003e t_small.ttl\n```\n\n### docker\n\nYou can build a docker image locally using the `Dockerfile`:\n\n```\ngit clone --recursive https://github.com/AndreaGuarracino/rs-spodgi\ncd rs-spodgi\ndocker build . --file Dockerfile --tag rs_spodgi_img\n```\n\nand run it with\n\n```\ndocker run --rm -it -v ${PWD}/test/:/test rs_spodgi_img rs-spodgi --gfa test/t.gfa\n```\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fandreaguarracino%2Frs-spodgi","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fandreaguarracino%2Frs-spodgi","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fandreaguarracino%2Frs-spodgi/lists"}