{"id":17930929,"url":"https://github.com/andreped/wsi-visualization-demo","last_synced_at":"2026-01-24T06:03:55.709Z","repository":{"id":258595189,"uuid":"874227492","full_name":"andreped/wsi-visualization-demo","owner":"andreped","description":"🔬 Simple containerised whole slide image rendering in the browser","archived":false,"fork":false,"pushed_at":"2024-10-18T04:31:57.000Z","size":17740,"stargazers_count":4,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"main","last_synced_at":"2025-10-08T11:53:07.839Z","etag":null,"topics":["browser","deepzoom","docker","dzi","histopathology","html","http","hugging-face","hugging-face-spaces","huggingface","nginx","openseadragon","pathology","real-time","web","whole-slide-image","wsi"],"latest_commit_sha":null,"homepage":"https://huggingface.co/spaces/andreped/wsi-visualization-demo","language":"HTML","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/andreped.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2024-10-17T13:15:15.000Z","updated_at":"2025-09-01T03:42:11.000Z","dependencies_parsed_at":"2024-10-21T14:10:18.509Z","dependency_job_id":null,"html_url":"https://github.com/andreped/wsi-visualization-demo","commit_stats":null,"previous_names":["andreped/wsi-visualization"],"tags_count":1,"template":false,"template_full_name":null,"purl":"pkg:github/andreped/wsi-visualization-demo","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/andreped%2Fwsi-visualization-demo","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/andreped%2Fwsi-visualization-demo/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/andreped%2Fwsi-visualization-demo/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/andreped%2Fwsi-visualization-demo/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/andreped","download_url":"https://codeload.github.com/andreped/wsi-visualization-demo/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/andreped%2Fwsi-visualization-demo/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":28715652,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-01-24T05:53:42.649Z","status":"ssl_error","status_checked_at":"2026-01-24T05:53:41.698Z","response_time":89,"last_error":"SSL_read: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["browser","deepzoom","docker","dzi","histopathology","html","http","hugging-face","hugging-face-spaces","huggingface","nginx","openseadragon","pathology","real-time","web","whole-slide-image","wsi"],"created_at":"2024-10-28T21:18:39.076Z","updated_at":"2026-01-24T06:03:55.674Z","avatar_url":"https://github.com/andreped.png","language":"HTML","funding_links":[],"categories":[],"sub_categories":[],"readme":"---\ntitle: wsi-visualization-demo\nemoji: 🔬\ncolorFrom: blue\ncolorTo: red\nsdk: docker\nsdk_version: \"24.0.6\"\napp_file: Dockerfile\npinned: false\n---\n\n# wsi-visualization-demo\n\n[![license](https://img.shields.io/github/license/DAVFoundation/captain-n3m0.svg?style=flat-square)](https://github.com/andreped/wsi-visualization-demo/blob/main/LICENSE.md)\n\u003ca target=\"_blank\" href=\"https://huggingface.co/spaces/andreped/wsi-visualization-demo\"\u003e\u003cimg src=\"https://img.shields.io/badge/🤗%20Hugging%20Face-Spaces-yellow.svg\"\u003e\u003c/a\u003e\n\n## Why?\n\nThis repository was developed to demonstrate how to do the following:\n* Creating a simple web application for rendering a whole slide image in real time.\n* Containerizing and deploying a web app for deployment on Hugging Face Spaces.\n\nTo access the live demo, click on the `Hugging Face` badge above. Below is a snapshot of the current state of the demo app.\n\n\u003cimg width=\"1400\" alt=\"demo-hf-spaces\" src=\"https://github.com/user-attachments/assets/6cf9b9d5-4ea2-4cab-ac13-3a623edc1094\"\u003e\n\n## Stack\n\nFor this demonstration, we have used the following:\n\n| Component | Description |\n| - | - |\n| **OpenSeadragon** | The actual library for rendering the WSI |\n| **Deep Zoom Image (DZI)** | Image file format compatible with OpenSeadragon |\n| **nginx** | HTTP web server |\n| **Docker** | Containerization of the web app |\n| **Hugging Face Spaces** | Deployment platform |\n\n## Continuous integration\n\nFor this project, we continuously update the Hugging Face deployment for each commit to the main branch.\n\n| Build Type | Status |\n| - | - |\n| **HF Space Deploy** | [![CI](https://github.com/andreped/wsi-visualization-demo/workflows/Deploy/badge.svg)](https://github.com/andreped/wsi-visualization-demo/actions) |\n| **File Size Check** | [![CI](https://github.com/andreped/wsi-visualization-demo/workflows/Check%20file%20size/badge.svg)](https://github.com/andreped/wsi-visualization-demo/actions) |\n\n## Docker\n\n1. Build image:\n```\ndocker build -t wsi-visualization .\n```\n\n2. Run image:\n```\ndocker run -p 7860:7860 wsi-visualization\n```\n\n3. Open in browser:\n```\nopen http://localhost:7860\n```\n\n## License\n\nThis project has MIT License.\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fandreped%2Fwsi-visualization-demo","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fandreped%2Fwsi-visualization-demo","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fandreped%2Fwsi-visualization-demo/lists"}