{"id":25520541,"url":"https://github.com/annakrystalli/rrcompendiumdtb","last_synced_at":"2026-01-27T03:01:32.375Z","repository":{"id":47456602,"uuid":"220637925","full_name":"annakrystalli/rrcompendiumDTB","owner":"annakrystalli","description":"Full Reproducible Research Compendium produced with rrtools including travis, dockerfile \u0026 binder setup","archived":false,"fork":false,"pushed_at":"2020-02-24T15:02:56.000Z","size":545,"stargazers_count":7,"open_issues_count":0,"forks_count":1,"subscribers_count":2,"default_branch":"master","last_synced_at":"2025-10-11T18:05:02.754Z","etag":null,"topics":["binder-ready","dockerized","research-compendium","rrtools","rstats","travis-ci"],"latest_commit_sha":null,"homepage":"","language":"TeX","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/annakrystalli.png","metadata":{"files":{"readme":"README.Rmd","changelog":null,"contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2019-11-09T12:18:52.000Z","updated_at":"2021-08-17T11:58:46.000Z","dependencies_parsed_at":"2022-08-28T09:03:42.616Z","dependency_job_id":null,"html_url":"https://github.com/annakrystalli/rrcompendiumDTB","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/annakrystalli/rrcompendiumDTB","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/annakrystalli%2FrrcompendiumDTB","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/annakrystalli%2FrrcompendiumDTB/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/annakrystalli%2FrrcompendiumDTB/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/annakrystalli%2FrrcompendiumDTB/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/annakrystalli","download_url":"https://codeload.github.com/annakrystalli/rrcompendiumDTB/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/annakrystalli%2FrrcompendiumDTB/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":28798595,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-01-27T01:07:07.743Z","status":"online","status_checked_at":"2026-01-27T02:00:07.755Z","response_time":168,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["binder-ready","dockerized","research-compendium","rrtools","rstats","travis-ci"],"created_at":"2025-02-19T17:48:41.798Z","updated_at":"2026-01-27T03:01:32.354Z","avatar_url":"https://github.com/annakrystalli.png","language":"TeX","funding_links":[],"categories":[],"sub_categories":[],"readme":"---\noutput: github_document\n---\n\n\u003c!-- README.md is generated from README.Rmd. Please edit that file --\u003e\n\n```{r, echo = FALSE}\nknitr::opts_chunk$set(\n  collapse = TRUE,\n  comment = \"#\u003e\",\n  fig.path = \"README-\"\n)\n```\n\n# rrcompendiumDTB\n\n\u003c!-- badges: start --\u003e\n[![Travis-CI Build Status](https://travis-ci.com/annakrystalli/rrcompendiumDTB.svg?branch=master)](https://travis-ci.com/annakrystalli/rrcompendiumDTB)\n[![Launch Rstudio Binder](http://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/annakrystalli/rrcompendiumDTB/master?urlpath=rstudio)\n\u003c!-- badges: end --\u003e\n\nThis repository contains the data and code for our reproduction paper:\n\n\u003e Krystalli, A, (2018). _Partial Reproduction of Boettiger Ecology Letters 2018;21:1255–1267 with rrtools_.  \u003chttps://doi.org/{DOI-to-paper}\u003e\n\nOur reproduction pre-print is online here:\n\n\u003e Krystalli, A, (2018). _Partial Reproduction of Boettiger Ecology Letters 2018;21:1255–1267 with rrtools_, Accessed `r format(Sys.Date(), \"%d %b %Y\")`. Online at \u003chttps://doi.org/{DOI-to-compendium}\u003e\n\n\n### How to cite\n\nPlease cite this compendium as:\n\n\u003e Krystalli, A, (`r format(Sys.Date(), \"%Y\")`). _Compendium of R code and data for 'Partial Reproduction of Boettiger Ecology Letters 2018;21:1255–1267 with rrtools'_. Accessed `r format(Sys.Date(), \"%d %b %Y\")`. Online at \u003chttps://doi.org/{DOI-to-compendium}\u003e\n\n### How to download or install\n\nYou can download the compendium as a zip from from this URL: \u003chttps://github.com/annakrystalli/rrcompendiumDTB/archive/master.zip\u003e\n\nYou can install compendium functionality as an R package, `rrcompendiumDTB` by running `devtools::install()` in the root directory of the compendium.\n\nOr from GitHub with:\n\n\n```{r gh-installation, eval = FALSE}\n# install.packages(\"devtools\")\nremotes::install_github(\"annakrystalli/rrcompendiumDTB\")\n```\n\n\n### Reproducing the paper\n\nThe paper can be found at `analysis/paper/paper.Rmd`. Open the file and click on **knit** to reproduce the paper. Or run:\n\n```{r cmp-knit, eval = FALSE}\nrmarkdown::render(file.path(\"analysis\", \"paper\", \"paper.Rmd\"))\n```\n\nYou can perform this on your local machine or in the cloud: [![Launch Rstudio Binder](http://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/annakrystalli/rrcompendiumDTB/master?urlpath=rstudio)\n\n### Licenses\n\n**Text and figures :**  [CC-BY-4.0](http://creativecommons.org/licenses/by/4.0/) Copyright (c) 2018 Carl Boettiger.\n\n**Code :** See the [DESCRIPTION](DESCRIPTION) file\n\n**Data :** [CC-BY-4.0](http://creativecommons.org/licenses/by/4.0/), Copyright (c) 2018 Carl Boettiger.\n\n### Contributions\n\nWe welcome contributions from everyone. Before you get started, please see our [contributor guidelines](CONTRIBUTING.md). Please note that this project is released with a [Contributor Code of Conduct](CONDUCT.md). By participating in this project you agree to abide by its terms.\n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fannakrystalli%2Frrcompendiumdtb","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fannakrystalli%2Frrcompendiumdtb","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fannakrystalli%2Frrcompendiumdtb/lists"}