{"id":24285355,"url":"https://github.com/aofarrel/verbose-fiesta","last_synced_at":"2026-03-10T04:32:15.749Z","repository":{"id":54687997,"uuid":"291112733","full_name":"aofarrel/verbose-fiesta","owner":"aofarrel","description":"Scraps of documentation for various projects. 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This is mostly for my own organizational purposes. Nevertheless, if you feel it could be improved, criticism and contributions are welcome. **Please be aware that this page might not represent the most up-to-date version of documentation. Also note that this mirroring is done manually, so contribution history may appear on either this repo or (if applicable) the repo it is mirroring, depending on which repo the contributions were made against.**\n\nThe name of this repository was the random one suggested by GitHub, and since it was such a good description of my writing style, it stuck.\n\n## Brief overview\nDockstore folder: Documentation related to [Dockstore](https://dockstore.org/), a UCSC/OICR collaboration for bioinformatics workflows. \n\nTerra folder: Documentation related to [Terra](https:/terra.bio/), a Broad Institute platform for using bioinformatics workflows on a Google Cloud backend. This repo does *not* contain the notebooks I wrote for BYOD use cases because those are already [mirrored on ttt](https://github.com/aofarrel/ttt).\n\n## Index\n\n📁 Dockstore  \n‎ ‎ 📝 **Collection_TOPMedAligner.md**  \n‏ ‎ ‎ ‎ ‏ ‏ ‏ ‏ ‎ ‎ ‎ ‏ ‏ ‏ --\u003e mirrored from [TOPMed organization's aligner collection](https://dockstore.org/organizations/topmed/collections/alignmentt)  \n‎ ‎ 📝 **ORCID.md**    \n‎ ‎ 📝 **ORCID.rst**  \n‏ ‎ ‎ ‎ ‏ ‏ ‏ ‏ ‎ ‎ ‎ ‏ ‏ ‏ --\u003e rst ver of ORCID doc, images look broken but work in prod  \n‏ ‎ ‎ ‎ ‏ ‏ ‏ ‏ ‎ ‎ ‎ ‏ ‏ ‏ --\u003e mirrored from [my fork](https://github.com/aofarrel/dockstore-documentation/blob/develop/docs/end-user-topics/ORCID.rst), see [PR 79](https://github.com/dockstore/dockstore-documentation/pull/79)  \n‎ ‎ 📁 Images  \n‏ ‎ ‎ ‎ ‏ ‏ ‏ ‏ ‎ ‎ ‎ ‏ ‏ ‏ --\u003e Images related to Dockstore documentation  \n📁 Terra  \n‎ ‎ ‎ 📝 **AnVIL_BYODtoTerra.md**  \n‏ ‎ ‎ ‎ ‏ ‏ ‏ ‏ ‎ ‎ ‎ ‏ ‏ ‏ --\u003e AnVIL ver of BYOD overview (excludes Gen3)  \n‏ ‎ ‎ ‎ ‏ ‏ ‏ ‏ ‎ ‎ ‎ ‏ ‏ ‏ --\u003e mirrored from [DataBiosphere repo, AnVIL branch](https://github.com/DataBiosphere/BYOD-to-Terra/blob/anvil/full_documentation.md)   \n‎ ‎ ‎ 📝 **BDC_BYODtoTerra.md**  \n‏ ‎ ‎ ‎ ‏ ‏ ‏ ‏ ‎ ‎ ‎ ‏ ‏ ‏ --\u003e BioData Catalyst ver of BYOD overview (includes Gen3)  \n‏ ‎ ‎ ‎ ‏ ‏ ‏ ‏ ‎ ‎ ‎ ‏ ‏ ‏ --\u003e mirrored from [DataBiosphere repo, master](https://github.com/DataBiosphere/BYOD-to-Terra/blob/master/full_documentation.md)  \n‎ ‎ ‎ 📝 **BDC_workflowTips.md**       \n‎ ‎ ‎ 📝 **Introduction_to_Terra's_Terminal**  \n‏ ‎ ‎ ‎ ‏ ‏ ‏ ‏ ‎ ‎ ‎ ‏ ‏ ‏ --\u003e mirrored from [this hackmd.io doc](https://hackmd.io/@AshedPotatoes/rkEb7PTHL)  \n‎ ‎ 📁 Images  \n‏ ‎ ‎ ‎ ‏ ‏ ‏ ‏ ‎ ‎ ‎ ‏ ‏ ‏ --\u003e Images related to Terra documentation  \n‎ ‎ 📁 Workspaces       \n‎ ‏ ‎ ‎ ‎ ‏ ‏ ‏📝 **BloodPressure_GWAS_Template.md**  \n‎ ‏ ‎ ‎ ‎ ‏ ‏ ‏ ‏ ‎ ‎ ‎ ‏ ‏ ‏--\u003e mirrored from the TOPMed GWAS tutorial template workspace on Terra  \n‎ ‏ ‎ ‎ ‎ ‏ ‏ ‏ ‏ ‎ ‎ ‎ ‏ ‏ ‏--\u003e designed to be run on \"real\" data  \n‎ ‏ ‎ ‎ ‎ ‏ ‏ ‏ ‏ ‎ ‎ ‎ ‏ ‏ ‏--\u003e the actual notebooks are mirroed in [the bdcat_notebooks repo](https://github.com/DataBiosphere/bdcat_notebooks/tree/master/notebooks)  \n‎ ‏ ‎ ‎ ‎ ‏ ‏ ‏📝 **ThousandGenomes_GWAS_Template.md**  \n‎ ‏ ‎ ‎ ‎ ‏ ‏ ‏ ‏ ‎ ‎ ‎ ‏ ‏ ‏--\u003e mirrored from the 1000 Genomes GWAS tutorial template workspace on Terra   \n‎ ‏ ‎ ‎ ‎ ‏ ‏ ‏ ‏ ‎ ‎ ‎ ‏ ‏ ‏--\u003e designed to be run on a certain group of open data, including mock phenotypic data  \n‎ ‏ ‎ ‎ ‎ ‏ ‏ ‏ ‏ ‎ ‎ ‎ ‏ ‏ ‏--\u003e the actual notebooks are mirroed in [the bdcat_notebooks repo](https://github.com/DataBiosphere/bdcat_notebooks/tree/master/notebooks)  \n‎ ‏ ‎ ‎ ‎ ‏ ‏ ‏📝 **TOPMedAligner_Featured_WS.md**  \n‎ ‏ ‎ ‎ ‎ ‏ ‏ ‏ ‏ ‎ ‎ ‎ ‏ ‏ ‏--\u003e planned featured workspace   \n‎ ‏ ‎ ‎ ‎ ‏ ‏ ‏📝 **TOPMedAligner_Template_WS.md**  \n‎ ‏ ‎ ‎ ‎ ‏ ‏ ‏ ‏ ‎ ‎ ‎ ‏ ‏ ‏--\u003e mirrored from [the Gen3 template workspace on Terra](https://app.terra.bio/#workspaces/biodata-catalyst/TOPMed%20Aligner%20Gen3%20Data)  \n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Faofarrel%2Fverbose-fiesta","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Faofarrel%2Fverbose-fiesta","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Faofarrel%2Fverbose-fiesta/lists"}