{"id":24508465,"url":"https://github.com/aplbrain/neuroglancer-segment-properties","last_synced_at":"2025-03-15T09:20:59.029Z","repository":{"id":239227939,"uuid":"798350161","full_name":"aplbrain/neuroglancer-segment-properties","owner":"aplbrain","description":"This application integrates with Neuroglancer via the CAVEclient library to manage neuroimaging data, allowing users to create, view, and manipulate segment properties in its 3D environment.","archived":false,"fork":false,"pushed_at":"2024-05-10T02:38:46.000Z","size":1822,"stargazers_count":0,"open_issues_count":1,"forks_count":0,"subscribers_count":4,"default_branch":"main","last_synced_at":"2025-01-22T00:16:07.279Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/aplbrain.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2024-05-09T15:46:54.000Z","updated_at":"2024-05-10T18:51:57.000Z","dependencies_parsed_at":"2024-05-10T20:46:33.509Z","dependency_job_id":"a51c3567-1e65-4364-83bd-1b3d881f829f","html_url":"https://github.com/aplbrain/neuroglancer-segment-properties","commit_stats":null,"previous_names":["aplbrain/neuroglancer-segment-properties"],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aplbrain%2Fneuroglancer-segment-properties","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aplbrain%2Fneuroglancer-segment-properties/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aplbrain%2Fneuroglancer-segment-properties/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aplbrain%2Fneuroglancer-segment-properties/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/aplbrain","download_url":"https://codeload.github.com/aplbrain/neuroglancer-segment-properties/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":243707942,"owners_count":20334733,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2025-01-22T00:16:24.490Z","updated_at":"2025-03-15T09:20:59.001Z","avatar_url":"https://github.com/aplbrain.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"# Overview: UI for Segment Properties in Neuroglancer\nThis system is designed to enable users to generate URLs that link to specific segment properties within Neuroglancer, an interactive web-based tool for visualizing 3D image data. \n\nThe involves selecting a datastack using CAVEclient and a corresponding table from a dropdown menu, which then triggers a server-side computation to generate a URL that points directly to the configured view in Neuroglancer.\n\n![Pipeline](https://github.com/aplbrain/neuroglancer-segment-properties/assets/66258538/d256ad0d-3493-4f0d-97c2-acffca669afe)\n# Setting Up\n**Installation**\nUpgrade pip and install required packages:\n`python -m pip install --upgrade pip`\n`pip install Flask caveclient pandas numpy`\n\n**Running the Application** \nTo start the server and run the application, navigate to the project directory and execute:\n`python app.py`\n\n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Faplbrain%2Fneuroglancer-segment-properties","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Faplbrain%2Fneuroglancer-segment-properties","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Faplbrain%2Fneuroglancer-segment-properties/lists"}