{"id":23057291,"url":"https://github.com/applicativesystem/alignmentgo","last_synced_at":"2025-04-03T05:45:42.645Z","repository":{"id":257760175,"uuid":"858718417","full_name":"applicativesystem/go-alignment","owner":"applicativesystem","description":"a cloud native application for large scale 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alignmentGO \n- a golang package for phylogenomics\n- all the alignment utilites combined with a http server in a single genome scale package.\n- This single application bring together all the functions i coded previously in a single package.\n- All single package will be still available from my github repository and this complete package will be available from GO packages. \\\n  https://github.com/codecreatede/golang-reference-alignment-estimate \\\n  https://github.com/codecreatede/golang-alignment-block-genotyper-eDNA \\\n  https://github.com/codecreatede/goroutines-phylogenomics-filter \\\n  https://github.com/codecreatede/golang-alignment-block-getter \\\n  https://github.com/codecreatede/go-alignment-estimate \\\n  https://github.com/codecreatede/go-phylogenomics-tab \\\n  https://github.com/codecreatede/goroutines-alignment-merger \\\n  https://github.com/codecreatede/go-alignment-block-estimate \\\n  https://github.com/codecreatede/go-alignment-proportion \n- it deals with the complete phylogenomics and perfom all the work of the phylogenomics\n- from alignment to the merging, filtering and generating the bootstrap phylogenomes.\n```\n➜  alignmentGO git:(main) ✗ go run main.go\nThis is a complete alignmentGo package for the phylogenomics and whole genome alignment\n\nUsage:\n  flags [command]\n\nAvailable Commands:\n  completion  Generate the autocompletion script for the specified shell\n  estimate\n  help        Help about any command\n  merge\n  unified\n\nFlags:\n  -h, --help   help for flags\n\nUse \"flags [command] --help\" for more information about a command.\n➜  alignmentGO git:(main) ✗ go run main.go estimate -h\nThis estimates the site by site alignment estimates across the alignment and it takes the first genome \nas a reference for the estimation of the site variablitiy\n\nUsage:\n  flags estimate [flags]\n\nFlags:\n  -h, --help           help for estimate\n  -a, --title string   alignment file for the estimate (default \"alignment file\")\n➜  alignmentGO git:(main) ✗ go run main.go merge -h\nThis merges all the alignment and gives the alignment ID header you have specified\n\nUsage:\n  flags merge [flags]\n\nFlags:\n  -A, --alignmentfile string   a alignment file (default \"align\")\n  -h, --help                   help for merge\n  -T, --title string           alignment title (default \"title for the alignment\")\n➜  alignmentGO git:(main) ✗ go run main.go unified -h\nThis estimates the site proportion in your whole genome or gene specific alignment\n\nUsage:\n  flags unified [flags]\n\nFlags:\n  -a, --alignmentfile string   a alignment file (default \"align\")\n  -h, --help                   help for unified\n```\n\nGaurav Sablok\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fapplicativesystem%2Falignmentgo","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fapplicativesystem%2Falignmentgo","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fapplicativesystem%2Falignmentgo/lists"}