{"id":23057358,"url":"https://github.com/applicativesystem/go-alignment-block-estimate","last_synced_at":"2025-04-03T06:12:38.187Z","repository":{"id":262142618,"uuid":"861168500","full_name":"applicativesystem/go-alignment-block-estimate","owner":"applicativesystem","description":"estimate blocks alignment 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go-alignment-block-estimate\n\n- a alignment block estimates of the selected block. \n- define the start and the stop of the alignment regions and it computes all the stats from the given block region\n- it will only process that block of the alignment and not the complete alignment. \n\n```\n[gauravsablok@ultramarine]~/Desktop/codecreatede/go-alignment-block-estimate% \\\ngo run main.go -h\nThis estimates the site proportion in your whole genome or gene specific alignment\n\nUsage:\n  flags [flags]\n\nFlags:\n  -a, --alignmentfile string   a alignment file (default \"align\")\n  -e, --endcoordinate int      end of the alignment block (default 40)\n  -h, --help                   help for flags\n  -s, --startcoordinate int    start of the alignment block (default 1)\n[gauravsablok@ultramarine]~/Desktop/codecreatede/go-alignment-block-estimate% \\\ngo run main.go -a ./samplefile/samplealignment.fasta -s 1 -e 10\nThe collinearity block for A as a base pattern and T as a mismatch is 1\nThe collinearity block for A as a base pattern G as a mismatch is  1\nThe collinearity block for A as a base pattern and C as a mismatch is  0\nThe collinearity block for T as a base pattern and G as a mismatch is  0\nThe collinearity block for T as a base pattern C as a mismatch is  %d 0\nThe collinearity block for T as a base pattern and A as a mismatch is  0\nThe collinearity block for G as a base pattern and C as a mismatch is  0\nThe collinearity block for G as a base pattern A as a mismatch is  0\nThe collinearity block for G as a base pattern and T as a mismatch is  0\nThe collinearity block for C as a base pattern and A as a mismatch is  0\nThe collinearity block for C as a base pattern T as a mismatch is  %d 0\nThe collinearity block for C as a base pattern and G as a mismatch is 0\nThe number of the unified bases across A are 0\nThe number of the unified bases across T are 0\nThe number of the unified bases across G are 0\nThe number of the unified bases across C are 1\n```\n\nGaurav Sablok \n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fapplicativesystem%2Fgo-alignment-block-estimate","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fapplicativesystem%2Fgo-alignment-block-estimate","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fapplicativesystem%2Fgo-alignment-block-estimate/lists"}