{"id":23057341,"url":"https://github.com/applicativesystem/go-alignment-block-getter","last_synced_at":"2025-06-17T05:05:27.255Z","repository":{"id":262142623,"uuid":"860995533","full_name":"applicativesystem/go-alignment-block-getter","owner":"applicativesystem","description":"alignment block getter for getting blocks of alignment from specific alignments","archived":false,"fork":false,"pushed_at":"2024-09-29T07:51:43.000Z","size":5,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"main","last_synced_at":"2024-12-16T02:12:08.185Z","etag":null,"topics":["bioinformatics","evolutionary-computation","genome-alignment","genome-analysis","genome-sequencing","golang-package","phylogenomics","phylogenomics-bioinformatics","phylogenomics-golang"],"latest_commit_sha":null,"homepage":"","language":"Go","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/applicativesystem.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2024-09-21T18:04:30.000Z","updated_at":"2024-09-30T08:06:45.000Z","dependencies_parsed_at":"2024-11-10T20:18:18.547Z","dependency_job_id":"8fc06df6-7ebb-4a19-9b73-19cf6cd38d3a","html_url":"https://github.com/applicativesystem/go-alignment-block-getter","commit_stats":null,"previous_names":["applicativesystem/go-alignment-block-getter"],"tags_count":2,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/applicativesystem%2Fgo-alignment-block-getter","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/applicativesystem%2Fgo-alignment-block-getter/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/applicativesystem%2Fgo-alignment-block-getter/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/applicativesystem%2Fgo-alignment-block-getter/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/applicativesystem","download_url":"https://codeload.github.com/applicativesystem/go-alignment-block-getter/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":237864020,"owners_count":19378257,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["bioinformatics","evolutionary-computation","genome-alignment","genome-analysis","genome-sequencing","golang-package","phylogenomics","phylogenomics-bioinformatics","phylogenomics-golang"],"created_at":"2024-12-16T02:12:03.886Z","updated_at":"2025-02-08T19:44:56.706Z","avatar_url":"https://github.com/applicativesystem.png","language":"Go","funding_links":[],"categories":[],"sub_categories":[],"readme":"# go-alignment-block-getter\n\n- etxracting a particular block of alignment from the genome alignment\n- extract a region specific block and write the block alignment.\n\n```\n[gauravsablok@ultramarine]~/Desktop/codecreatede/golang-alignment-block-getter% \\\ngo run main.go -h\nThis estimates the site proportion in your whole genome or gene specific alignment\n\nUsage:\n  flags [flags]\n\nFlags:\n  -a, --alignmentfile string   a alignment file (default \"align\")\n  -e, --endcoordinate int      end of the alignment block (default 40)\n  -h, --help                   help for flags\n  -s, --startcoordinate int    start of the alignment block (default 1)\n[gauravsablok@ultramarine]~/Desktop/codecreatede/golang-alignment-block-getter% \\\ngo run main.go -a ./samplefile/samplealignment.fasta -s 1 -e 10\n\u003eENA|OX291461|OX291461.1         AACTATC--\n\u003eENA|OX291509|OX291509.1         CTC----TC\n\n```\n\n\nGaurav Sablok\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fapplicativesystem%2Fgo-alignment-block-getter","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fapplicativesystem%2Fgo-alignment-block-getter","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fapplicativesystem%2Fgo-alignment-block-getter/lists"}