{"id":23057362,"url":"https://github.com/applicativesystem/go-alignment-estimate","last_synced_at":"2025-04-03T06:12:41.647Z","repository":{"id":262142597,"uuid":"859502863","full_name":"applicativesystem/go-alignment-estimate","owner":"applicativesystem","description":"a block basis estimate of the whole genome alignment 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go-whole-genome-estimates\n\n- a whole genome linear block estimation. \n- block is defined as a single line for the aligned genome. \n- no matter how many genome you aligned you can pass the alignment file.\n- the first genome will be taken as a reference. \n- check the AlignmentGO package for defining your own block size. \n\n```\n[gauravsablok@fedora]~/Desktop/codecreatede/whole-genome-alignment-estimate% \\\ngo run main.go -alignment ./samplefile/samplealignment.fasta\nThe collinearity block for A as a base pattern and T as a mismatch is 1\nThe collinearity block for A as a base pattern G as a mismatch is  1\nThe collinearity block for A as a base pattern and C as a mismatch is 1\nThe collinearity block for T as a base pattern and G as a mismatch is 0\nThe collinearity block for T as a base pattern C as a mismatch is  0\nThe collinearity block for T as a base pattern and A as a mismatch is 0\nThe collinearity block for G as a base pattern and C as a mismatch is 1\nThe collinearity block for G as a base pattern A as a mismatch is  0\nThe collinearity block for G as a base pattern and T as a mismatch is 0\nThe collinearity block for C as a base pattern and A as a mismatch is 0\nThe collinearity block for C as a base pattern T as a mismatch is  0\nThe collinearity block for C as a base pattern and G as a mismatch is 0\n```\n\nGaurav Sablok\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fapplicativesystem%2Fgo-alignment-estimate","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fapplicativesystem%2Fgo-alignment-estimate","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fapplicativesystem%2Fgo-alignment-estimate/lists"}