{"id":23057360,"url":"https://github.com/applicativesystem/go-alignment-proportion","last_synced_at":"2025-10-30T00:05:08.558Z","repository":{"id":262142600,"uuid":"859804477","full_name":"applicativesystem/go-alignment-proportion","owner":"applicativesystem","description":"golang for estimating the genome site proportion","archived":false,"fork":false,"pushed_at":"2024-09-29T07:56:17.000Z","size":5,"stargazers_count":1,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"main","last_synced_at":"2024-12-16T02:12:08.843Z","etag":null,"topics":["alignment-algorithms","alignments","bioinformatics","genome-analysis","genome-analysis-annotation","phylogenetic-analysis","phylogenetic-comparative-methods","phylogenomics","phylogenomics-bioinformatics"],"latest_commit_sha":null,"homepage":"","language":"Go","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/applicativesystem.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2024-09-19T10:01:28.000Z","updated_at":"2024-09-29T07:56:20.000Z","dependencies_parsed_at":"2024-11-10T20:18:14.341Z","dependency_job_id":"3c837d45-9402-4220-b8cd-45c25f823d08","html_url":"https://github.com/applicativesystem/go-alignment-proportion","commit_stats":null,"previous_names":["applicativesystem/go-alignment-proportion"],"tags_count":2,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/applicativesystem%2Fgo-alignment-proportion","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/applicativesystem%2Fgo-alignment-proportion/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/applicativesystem%2Fgo-alignment-proportion/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/applicativesystem%2Fgo-alignment-proportion/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/applicativesystem","download_url":"https://codeload.github.com/applicativesystem/go-alignment-proportion/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":237864004,"owners_count":19378257,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["alignment-algorithms","alignments","bioinformatics","genome-analysis","genome-analysis-annotation","phylogenetic-analysis","phylogenetic-comparative-methods","phylogenomics","phylogenomics-bioinformatics"],"created_at":"2024-12-16T02:12:05.379Z","updated_at":"2025-02-08T19:44:58.587Z","avatar_url":"https://github.com/applicativesystem.png","language":"Go","funding_links":[],"categories":[],"sub_categories":[],"readme":"go-alignment-proportion\n\n- estimates the number of the unified bases in whole genome alignments\n- faster calibration rates\n- part of the alignmentGO package but can be used separately\n- given a alignment it will profile, list the indices and the sites of the same bases.\n```\n[gauravsablok@fedora]~/Desktop/codecreatede/go-alignment-proportion% \ngo run main.go -h\nThis estimates the site proportion in your whole genome or gene specific alignment\n\nUsage:\n  flags [flags]\n\nFlags:\n  -a, --alignmentfile string   a alignment file (default \"align\")\n  -h, --help                   help for flags\n[gauravsablok@fedora]~/Desktop/codecreatede/go-alignment-proportion% \\\ngo run main.go -a ./samplefile/samplealignment.fasta\nThe alignment counts for the A unified bases to the rest of the same sites in the block are: 1\nThe alignment counts for the T unified bases to the rest of the same sites in the block are: 2\nThe alignment counts for the G unified bases to the rest of the same sites in the block are: 1\nThe alignment counts for the C unified bases to the rest of the same sites in the block are: 1\n```\n\nGaurav Sablok\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fapplicativesystem%2Fgo-alignment-proportion","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fapplicativesystem%2Fgo-alignment-proportion","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fapplicativesystem%2Fgo-alignment-proportion/lists"}