{"id":23057374,"url":"https://github.com/applicativesystem/go-goannotate","last_synced_at":"2025-07-06T20:39:01.241Z","repository":{"id":256843272,"uuid":"856212274","full_name":"applicativesystem/go-goannotate","owner":"applicativesystem","description":"golang annotation for genome 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go-goannotate\n\n- annotation and genome annotation summarizer.\n- takes a gff file and summarizes all the regions such as mRNA, cds, protein five prime UTR, and three prime UTR. \n- process as many genomes at a single time \n```\ngit clone htts.github.com/go-goannotate\ngo run main.go\n\n```\n- detail usage \n\n```\n╰─$ go run main.go -h\nannotate and visualize your genome\n\nUsage:\n  golanannotate [flags]\n\nFlags:\n  -A, --annotationfile string   genome annotation (default \"path to the annotation file\")\n  -h, --help                    help for golanannotate\nexit status 1\n```\n- it will generate the summary \n```\n╭─gauavsablok@gauravsablok ~/Desktop/go/go-goannotate ‹main●›\n╰─$ go run main.go -A sample-file/sample-TAIR10_GFF3_genes.gff\nThe assembled genome from the gff annotations summare are given below:\nThe total assembled mRNA are: 26857\nThe total assembled mRNA plus strand are: 18053\nThe total assembled mRNA minus strand are: 8804\nThe total assembled exon are: 19536\nThe total assembled exon plus strand are: 13976\nThe total assembled exon minus strand are: 5560\nThe total assembled cds are: 15712\nThe total assembled cds plus strand are: 552\nThe total assembled cds minus strand are: 276\nThe total assembled protein are: 22456\nThe total assembled protein plus strand are: 16990\nThe total assembled protein minus strand are: 5466\nThe total assembled five are: 1477\nThe total assembled five plus strand are: 602\nThe total assembled five minus strand are: 875\nThe total assembled three are: 2128\nThe total assembled three plus strand are: 455\nThe total assembled three minus strand are: 1673\nexit status 1\n\n```\nGaurav Sablok\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fapplicativesystem%2Fgo-goannotate","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fapplicativesystem%2Fgo-goannotate","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fapplicativesystem%2Fgo-goannotate/lists"}