{"id":23057359,"url":"https://github.com/applicativesystem/go-longread-canvas","last_synced_at":"2025-04-03T06:12:41.606Z","repository":{"id":259421346,"uuid":"877566666","full_name":"applicativesystem/go-longread-canvas","owner":"applicativesystem","description":"trimmomatic for long 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go-longread-canvas\n\n- trimmomatic for the long reads, no heap memory allocation required, runs on goroutines and later adding the waitgroup.\n- uses the same as a single line one pattern only file, see the pattern.txt as how to define the pattern. \n- parsed 100GB fastq file in few seconds. \n- give a pattern files and ports the goroutines for the long reads. \n\n```\n╭─gauavsablok@gauravsablok ~/Desktop/go/go-longread-canvas ‹main●›\n╰─$ go run main.go -h\nlook for the matching patterns\n\nUsage:\n  longread [flags]\n\nFlags:\n  -h, --help              help for longread\n  -L, --longread string   long read file to be checked (default \"path to the long read file\")\n  -P, --pattern string    pattern file (default \"path to the file containing the patterns\")\nexit status 1\n```\n-detailed usage\n```\n╭─gauavsablok@gauravsablok ~/Desktop/go/go-longread-canvas ‹main●›\n╰─$ go run main.go -L sample.fastq -P pattern.txt\nThe canavssed reads have been written\nexit status 1\n╭─gauavsablok@gauravsablok ~/Desktop/go/go-longread-canvas ‹main●›\n╰─$ cat sample.fastq                                                                                                                                                1 ↵\n@ERR10930361.1 magdelm64071_201030_115446/27\nATACTTTAAATTTTAGTTACTATTATTATTATTTAAAAAAAAAAAAAAAATTGAAAGTATATCCAAACTAGCACTCAATTAATGCAAACAATATTGTAACTTGGAAAAAGTTCAAAGGCATGAAAATCAAGATTTTTCATTTAATCAACCGGGTCAAGCAAAGTATGA\n@ERR10930361.1 magdelm64071_201030_115446/27\nATACTTTAAATTTTAGTTACTATTATTATTATTTAAAAAAAAAAAAAAAATTGAAAGTATATCCAAACTAGCACTCAATTAATGCAAACAATATTGTAACTTGGAAAAAGTTCAAAGGCATGAAAATCAAGATTTTTCATTTAATCAACCGGGTCAAGCAAAGTATGA\n╭─gauavsablok@gauravsablok ~/Desktop/go/go-longread-canvas ‹main●›\n╰─$ cat canvased.fastq\n@ERR10930361.1\nATACTTTAAATTTTAGTTACTATTATTATTATTTTTGAAAGTATATCCAAACTAGCACTCAATTAATGCAAACAATATTGTAACTTGGAAAAAGTTCAAAGGCATGAAAATCAAGATTTTTCATTTAATCAACCGGGTCAAGCAAAGTATGA\n@ERR10930361.1\nATACTTTAAATTTTAGTTACTATTATTATTATTTTTGAAAGTATATCCAAACTAGCACTCAATTAATGCAAACAATATTGTAACTTGGAAAAAGTTCAAAGGCATGAAAATCAAGATTTTTCATTTAATCAACCGGGTCAAGCAAAGTATGA\n```\n\nGaurav Sablok\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fapplicativesystem%2Fgo-longread-canvas","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fapplicativesystem%2Fgo-longread-canvas","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fapplicativesystem%2Fgo-longread-canvas/lists"}