{"id":23057240,"url":"https://github.com/applicativesystem/go-pacbiohifi","last_synced_at":"2025-04-03T05:45:31.974Z","repository":{"id":253491929,"uuid":"843676777","full_name":"applicativesystem/go-pacbiohifi","owner":"applicativesystem","description":"profiling pacbiokmers and filtering pacbio kmers ","archived":false,"fork":false,"pushed_at":"2024-09-25T09:39:41.000Z","size":3018,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":2,"default_branch":"main","last_synced_at":"2025-01-11T12:57:10.632Z","etag":null,"topics":["bioinformatics","golang","golang-library","pacbio-data","pacbio-hifi-sequencing-reads","pacbio-sequencing","pacbiohifi"],"latest_commit_sha":null,"homepage":"","language":"Go","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/applicativesystem.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2024-08-17T04:47:56.000Z","updated_at":"2024-09-25T09:39:44.000Z","dependencies_parsed_at":"2024-08-17T05:42:00.364Z","dependency_job_id":"613b7c90-0011-4d34-80bf-4b4438fd0fe2","html_url":"https://github.com/applicativesystem/go-pacbiohifi","commit_stats":null,"previous_names":["codecreatede/go-pacbiohifi","applicativesystem/go-pacbiohifi"],"tags_count":2,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/applicativesystem%2Fgo-pacbiohifi","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/applicativesystem%2Fgo-pacbiohifi/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/applicativesystem%2Fgo-pacbiohifi/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/applicativesystem%2Fgo-pacbiohifi/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/applicativesystem","download_url":"https://codeload.github.com/applicativesystem/go-pacbiohifi/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":237864038,"owners_count":19378257,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["bioinformatics","golang","golang-library","pacbio-data","pacbio-hifi-sequencing-reads","pacbio-sequencing","pacbiohifi"],"created_at":"2024-12-16T02:11:39.398Z","updated_at":"2025-02-08T19:44:46.797Z","avatar_url":"https://github.com/applicativesystem.png","language":"Go","funding_links":[],"categories":[],"sub_categories":[],"readme":"# go-pacbiohifi\n\n- Profiling of the pacbiohifi reads, making mers and selective filtering of the mers based on composition for better sort and filtering of the kmers and hapmers. \n\n- Running from the binary\n```\n[gauravsablok@ultramarine]~/Desktop/codecreatede/golang/go-pacbiohifi% \\\n./go-pacbiohifi -h\nThis is a pacbiohifi streamline reader, which will tell you about how your sequencing pacbiohifi looks.\nYou can give the reads from the fastq or you can give the pacbio bam file from the sequencing\n\nUsage:\n  flags [flags]\n\nFlags:\n  -h, --help               help for flags\n  -i, --inputfile string   inputfile path to be given (default \"path to the inputfile\")\n  -k, --kmer int           kmer to be used for the analysis (default 4)\n  -d, --kmerremove float   kmer with this compositon to be removed (default 0.3)\n  -o, --ouputfile string   outputfile to be given (default \"path to the outputfile\")\n```\n- Running from the github repository \n```\n[gauravsablok@ultramarine]~/Desktop/codecreatede/golang/go-pacbiohifi% \\\ngo run main.go -i ./sample-files/samplepacbiohifi.fastq -k 5 -d 0.5\n\n```\n\nGaurav Sablok\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fapplicativesystem%2Fgo-pacbiohifi","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fapplicativesystem%2Fgo-pacbiohifi","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fapplicativesystem%2Fgo-pacbiohifi/lists"}