{"id":23057347,"url":"https://github.com/applicativesystem/go-pacbiohifi-visualization","last_synced_at":"2025-06-29T10:36:29.768Z","repository":{"id":262142621,"uuid":"862525377","full_name":"applicativesystem/go-pacbiohifi-visualization","owner":"applicativesystem","description":"streaming visualization of pacbiohifi 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go-pacbiohifi-visualization\n\n- bins the sequenced pacbiohifi reads for visualization\n- this should be used to see your sequencing runs distribution.\n- also takes the bam file convert them to the fastq and estimates and plots the visualization.\n- BAM support added, it converts the BAM file, reads the fastq and also puts the fasta for sending to the user.\n- Make sure that the BAM and the .pbi files are in the same folder and it will read all the BAM files for the run as a regular expression. \n- it uses [Pterm](https://github.com/pterm/pterm) to directly give you the visualization plots.\n\n```\ngauavsablok@gauravsablok ~/Desktop/codecreatede/golang/golang-pacbiohifi-visualization ±main⚡ » \\\ngo run main.go -h\nThis pacbiohifi application provides the binning intervals of the sequence classification from the sequencing reads\n\nUsage:\n  flag [command]\n\nAvailable Commands:\n  bam\n  completion  Generate the autocompletion script for the specified shell\n  fastq\n  help        Help about any command\n\nFlags:\n  -h, --help   help for flag\n\nUse \"flag [command] --help\" for more information about a command.\ngauavsablok@gauravsablok ~/Desktop/codecreatede/golang/golang-pacbiohifi-visualization ±main⚡ » \\\ngo run main.go fastq -h\nAnalyzes the fastq files\n\nUsage:\n  flag fastq [flags]\n\nFlags:\n  -h, --help               help for fastq\n  -i, --inputfile string   pacbiohifi reads file (default \"inputfile for the fastq reads\")\ngauavsablok@gauravsablok ~/Desktop/codecreatede/golang/golang-pacbiohifi-visualization ±main⚡ » \\\ngo run main.go bam -h\nAnalyzes the bam files\n\nUsage:\n  flag bam [flags]\n\nFlags:\n  -b, --bamfile string   pacbiohifi bam file or the folder containing the bam files along with the pbi files (default \"inputfile should be bam\")\n  -h, --help             help for bam\ngauavsablok@gauravsablok ~/Desktop/codecreatede/golang/golang-pacbiohifi-visualization ±main⚡ » \\\ngo run main.go fastq -i ./sample-files/samplepacbiohifi.fastq\n\n```\n\n![](https://github.com/codecreatede/go-pacbiohifi-visualization/blob/main/go-pacbiohifivisualization.png)\n\nGaurav Sablok\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fapplicativesystem%2Fgo-pacbiohifi-visualization","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fapplicativesystem%2Fgo-pacbiohifi-visualization","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fapplicativesystem%2Fgo-pacbiohifi-visualization/lists"}