{"id":23057343,"url":"https://github.com/applicativesystem/go-phylogenomics-tab","last_synced_at":"2025-04-03T06:12:38.705Z","repository":{"id":262142625,"uuid":"859248845","full_name":"applicativesystem/go-phylogenomics-tab","owner":"applicativesystem","description":"estimation of phygenome conservation across the genome alignments","archived":false,"fork":false,"pushed_at":"2024-09-29T07:49:17.000Z","size":5,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"main","last_synced_at":"2024-12-16T02:12:08.129Z","etag":null,"topics":["bioinformatics","data-structures","evolutionary-algorithms","genome","genome-analysis","genome-phylogenomics","phylogenomics","phylogenomics-golang"],"latest_commit_sha":null,"homepage":"","language":"Go","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/applicativesystem.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2024-09-18T10:47:06.000Z","updated_at":"2024-09-29T07:49:21.000Z","dependencies_parsed_at":"2024-11-10T20:18:28.413Z","dependency_job_id":"31f51e74-2ddd-4438-b997-df8d0923ff18","html_url":"https://github.com/applicativesystem/go-phylogenomics-tab","commit_stats":null,"previous_names":["applicativesystem/go-phylogenomics-tab"],"tags_count":2,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/applicativesystem%2Fgo-phylogenomics-tab","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/applicativesystem%2Fgo-phylogenomics-tab/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/applicativesystem%2Fgo-phylogenomics-tab/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/applicativesystem%2Fgo-phylogenomics-tab/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/applicativesystem","download_url":"https://codeload.github.com/applicativesystem/go-phylogenomics-tab/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":237864013,"owners_count":19378257,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["bioinformatics","data-structures","evolutionary-algorithms","genome","genome-analysis","genome-phylogenomics","phylogenomics","phylogenomics-golang"],"created_at":"2024-12-16T02:12:03.903Z","updated_at":"2025-02-08T19:44:57.359Z","avatar_url":"https://github.com/applicativesystem.png","language":"Go","funding_links":[],"categories":[],"sub_categories":[],"readme":"# go-phylogenomics-tab\n\n- estimates the phylogenomics conservation from your alignments.\n- estimate large scale implementation with sequence conservation scores\n- implementation of the native data structures by tabulating the alignment block as iter.\n- conversation score = number of the matches across the entire sequence block/ alignment length\n- these all subfunctions are available in the alignmentGO package. \n\n```\n[gauravsablok@fedora]~/Desktop/codecreatede/go-phyloegenomics-tab% \\\ngo run main.go -alignmentfile ./samplefile/samplealignment.fasta\nThe number of the matches across the alignments blocks are: 15\nThe number of the mismatches across the alignments blocks are: 71\nThe sequence conservation score for the matrix alignment is: 1% \n\n```\n\nGaurav Sablok\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fapplicativesystem%2Fgo-phylogenomics-tab","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fapplicativesystem%2Fgo-phylogenomics-tab","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fapplicativesystem%2Fgo-phylogenomics-tab/lists"}