{"id":23057303,"url":"https://github.com/applicativesystem/go-reference-alignment-estimate","last_synced_at":"2025-07-22T00:32:15.723Z","repository":{"id":262142643,"uuid":"863712702","full_name":"applicativesystem/go-reference-alignment-estimate","owner":"applicativesystem","description":"estimate the alignment stats based on a selected reference genome or gene sequence from the alignment","archived":false,"fork":false,"pushed_at":"2024-09-29T07:46:00.000Z","size":6,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"main","last_synced_at":"2024-12-16T02:12:07.326Z","etag":null,"topics":["bioinformatics","evolutionary-biology","evolutionary-computation","genome-alignment-bioinformatics","phylogenomics","phylogenomics-bioinformatics","phylogenomics-golang","whole-genome-sequencing"],"latest_commit_sha":null,"homepage":"","language":"Go","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/applicativesystem.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2024-09-26T19:18:26.000Z","updated_at":"2024-09-30T08:07:28.000Z","dependencies_parsed_at":"2024-11-10T20:28:23.118Z","dependency_job_id":null,"html_url":"https://github.com/applicativesystem/go-reference-alignment-estimate","commit_stats":null,"previous_names":["applicativesystem/go-reference-alignment-estimate"],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/applicativesystem%2Fgo-reference-alignment-estimate","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/applicativesystem%2Fgo-reference-alignment-estimate/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/applicativesystem%2Fgo-reference-alignment-estimate/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/applicativesystem%2Fgo-reference-alignment-estimate/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/applicativesystem","download_url":"https://codeload.github.com/applicativesystem/go-reference-alignment-estimate/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":237864032,"owners_count":19378257,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["bioinformatics","evolutionary-biology","evolutionary-computation","genome-alignment-bioinformatics","phylogenomics","phylogenomics-bioinformatics","phylogenomics-golang","whole-genome-sequencing"],"created_at":"2024-12-16T02:11:52.083Z","updated_at":"2025-02-08T19:44:52.341Z","avatar_url":"https://github.com/applicativesystem.png","language":"Go","readme":"# golang-reference-alignment-estimate \n\n- This package deals with the genome or the gene alignment and you can define a reference sequence for the same.\n-  By defining the reference sequence, you are using that sequence against the other sequence for the calculation of the alignment estimates.\n\n```\n[gauravsablok@ultramarine]~/Desktop/codecreatede/golang/golang-reference-alignment-estimate% \\\ngo run main.go -h\nThis is used to estimate the alignment according to the specified sequence\n\nUsage:\n  flags [flags]\n\nFlags:\n  -a, --alignment string     alignment file (default \"alignment file to be used for the estimate\")\n  -h, --help                 help for flags\n  -s, --refsequence string   reference sequence (default \"sequence to be used as reference\")\n```\nGaurav Sablok\n","funding_links":[],"categories":[],"sub_categories":[],"project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fapplicativesystem%2Fgo-reference-alignment-estimate","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fapplicativesystem%2Fgo-reference-alignment-estimate","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fapplicativesystem%2Fgo-reference-alignment-estimate/lists"}