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pacbiohifi-seq-app\n\n- a single page shiny express pacbiohifi-seq-app for profiling of the pacbiohifi sequencing reads sequencing facility or startups.\n- shiny API reference is located at [python API](https://shiny.posit.co/py/api/) and also here [express API](https://shiny.posit.co/py/docs/express-in-depth.html)\n- You can also host on tapyr template [template](https://github.com/Appsilon/tapyr-template)\n- parameters to set: fastq file path, readfiltercutoff, provide the name and the address of the sequencing facility, provide the name and the person responsible for sequencing.\n- installation dependencies\n```\n# First install htmltools, then shiny\npip install https://github.com/posit-dev/py-htmltools/tarball/main\npip install https://github.com/posit-dev/py-shiny/tarball/main\npip install shiny\npip install shinywidgets\npip install shinylive\npip install shinyswatch\n```\n- to use and build a dashboard will be build for the complete analysis including the name of the sequencing facility or center and the person\n```\ngit clone https://github.com/gauravcodepro/pacbiohifi-seq-app.git\ncd pacbiohifi-seq-app\n# put the fastq reads files there. provide the parameters and run as \nshiny run pacbiohifi-seq-app.py app.py --reload\n```\n- **To do today: bin according to the struger rule, bug check**\n\nGaurav Sablok\n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fapplicativesystem%2Fpacbiohifi-report-classifier","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fapplicativesystem%2Fpacbiohifi-report-classifier","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fapplicativesystem%2Fpacbiohifi-report-classifier/lists"}