{"id":23057319,"url":"https://github.com/applicativesystem/pangenome-metagenomics","last_synced_at":"2025-08-15T06:32:37.524Z","repository":{"id":262142649,"uuid":"847654580","full_name":"applicativesystem/pangenome-metagenomics","owner":"applicativesystem","description":"pangenome metagenomics normlization for specific ids","archived":false,"fork":false,"pushed_at":"2024-08-26T09:36:30.000Z","size":97,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"main","last_synced_at":"2024-11-10T20:18:15.443Z","etag":null,"topics":["bioinformatics","genome-analysis","genome-annotation","genome-informatics","metagenomics","metagenomics-binning","metagenomics-counts","metagenomics-data"],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/applicativesystem.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2024-08-26T09:34:01.000Z","updated_at":"2024-09-11T13:34:15.000Z","dependencies_parsed_at":"2024-11-10T20:28:31.989Z","dependency_job_id":null,"html_url":"https://github.com/applicativesystem/pangenome-metagenomics","commit_stats":null,"previous_names":["applicativesystem/pangenome-metagenomics"],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/applicativesystem%2Fpangenome-metagenomics","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/applicativesystem%2Fpangenome-metagenomics/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/applicativesystem%2Fpangenome-metagenomics/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/applicativesystem%2Fpangenome-metagenomics/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/applicativesystem","download_url":"https://codeload.github.com/applicativesystem/pangenome-metagenomics/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":229897442,"owners_count":18141135,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["bioinformatics","genome-analysis","genome-annotation","genome-informatics","metagenomics","metagenomics-binning","metagenomics-counts","metagenomics-data"],"created_at":"2024-12-16T02:11:55.729Z","updated_at":"2024-12-16T02:11:56.355Z","avatar_url":"https://github.com/applicativesystem.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"# pangenomeMetagenomicsNormalizer\n\n- takes a presence absence file of metagenomics and then sum the presence absence across the species and then divide it with the number of the gene ontology plus child categories included and presents you a ratio.\n- The higher the ratio means that the ontology is distributed well across all the species.\n\n```\npangenomeMetagenomicsNormalize(\"/Users/gauravsablok/Desktop/CodeCheck/csv_test_datasets/Pangenome.csv\")\n\tgo_category\teffectsize\n0\tatp-dependent clp atp-binding subunit\t34.50\n1\tdna a subunit\t13.29\n2\tdna gyrase subunit b\t11.50\n3\tphospho-2-dehydro-3-deoxyheptonate aldolase\t17.40\n4\t6-phospho-beta-glucosidase\t27.33\n...\t...\t...\n1656\tnucleotidyltransferase domain\t1.00\n1657\tsodium-dependent phosphate transporter\t0.10\n1658\tadenine-specific dna-methyltransferase ed\t0.25\n```\nGaurav Sablok \\\nUniversity of Potsdam \\\nPotsdam,Germany \n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fapplicativesystem%2Fpangenome-metagenomics","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fapplicativesystem%2Fpangenome-metagenomics","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fapplicativesystem%2Fpangenome-metagenomics/lists"}