{"id":23057275,"url":"https://github.com/applicativesystem/rust-fastp-clipped","last_synced_at":"2025-08-15T06:32:25.757Z","repository":{"id":265632568,"uuid":"896378942","full_name":"applicativesystem/rust-fastp-clipped","owner":"applicativesystem","description":"rust implementation of the tilled window approach","archived":false,"fork":false,"pushed_at":"2024-12-09T18:54:19.000Z","size":5,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"main","last_synced_at":"2024-12-09T19:39:36.328Z","etag":null,"topics":["bioinformatics","bioinformatics-analysis","bioinformatics-data","genome-analysis","genome-annotation","illumina-sequencing"],"latest_commit_sha":null,"homepage":"","language":"Rust","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/applicativesystem.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2024-11-30T07:44:57.000Z","updated_at":"2024-12-09T18:54:23.000Z","dependencies_parsed_at":"2024-11-30T08:32:12.787Z","dependency_job_id":"a7eb5fa5-d6aa-4a30-86d6-0d3aa2cf85db","html_url":"https://github.com/applicativesystem/rust-fastp-clipped","commit_stats":null,"previous_names":["applicativesystem/rust-window-clipped","applicativesystem/rust-fastp-clipped"],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/applicativesystem%2Frust-fastp-clipped","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/applicativesystem%2Frust-fastp-clipped/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/applicativesystem%2Frust-fastp-clipped/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/applicativesystem%2Frust-fastp-clipped/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/applicativesystem","download_url":"https://codeload.github.com/applicativesystem/rust-fastp-clipped/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":229897445,"owners_count":18141135,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["bioinformatics","bioinformatics-analysis","bioinformatics-data","genome-analysis","genome-annotation","illumina-sequencing"],"created_at":"2024-12-16T02:11:47.762Z","updated_at":"2024-12-16T02:11:48.165Z","avatar_url":"https://github.com/applicativesystem.png","language":"Rust","funding_links":[],"categories":[],"sub_categories":[],"readme":"# rust-window-clipped\n\n- rust implementation of the tilled window approach for dropping the adapters.\n- instead of looking at each base, scans the read using the length of the adapter so that it becomes fast iterative. \n- first drops the bases and then uses a iteration to clip the reads with in memory and no read and write multiple times.\n\n```\ncargo build\n\n```\n- how to run the binary\n\n```\nλ gauravsablok rust-fastp-clipped → λ git main* → ./target/debug/rust-window-clipped -h\nUsage: rust-window-clipped \u003cREADS_1_ARG\u003e \u003cREADS_2_ARG\u003e \u003cQUALITY_SCORE\u003e \u003cADAPTER_ARG\u003e\n\nArguments:\n  \u003cREADS_1_ARG\u003e    please provide the reads R1 file path\n  \u003cREADS_2_ARG\u003e    please provide the reads R2 file path\n  \u003cQUALITY_SCORE\u003e  please provide the quality value to be used as a threshold\n  \u003cADAPTER_ARG\u003e    please provide the adapter sequence\n\nOptions:\n  -h, --help     Print help\n  -V, --version  Print version\n\n```\n\nGaurav Sablok\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fapplicativesystem%2Frust-fastp-clipped","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fapplicativesystem%2Frust-fastp-clipped","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fapplicativesystem%2Frust-fastp-clipped/lists"}